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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan019948 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | MYB_related | ||||||||
Protein Properties | Length: 243aa MW: 26590.3 Da PI: 7.6622 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.8 | 2.8e-14 | 115 | 159 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky Aan019948 115 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 159 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 7.2 | 3 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.44E-4 | 29 | 55 | No hit | No description |
PROSITE profile | PS50090 | 4.333 | 32 | 55 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 18.267 | 108 | 164 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.65E-17 | 110 | 165 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-12 | 112 | 162 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 7.1E-18 | 112 | 162 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.2E-11 | 113 | 158 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.05E-11 | 115 | 160 | No hit | No description |
Pfam | PF00249 | 3.1E-12 | 115 | 159 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MADKKAYGLE SRIGLSRMPC IAHFEEDSKD CWDKIAIDVP GKTAEEVKHH YELLVDDLDR 60 IESGIVPLAC YTASSDDSGS HGGDDGTSKK SGNLRYHSSE GKASKADQER RKGVAWTEDE 120 HRLFLLGLEK YGKGDWRSIS RNFVVTRTPT QVASHAQKYF IRLNSINNKD RRRSSIHDIT 180 SVNNGDVSVP QPPTNDSPGK STKQQPIYGG QPVVGTPVNL APGFSVGTPV GVPPNIDPRV 240 SSX |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021986305.1 | 1e-105 | transcription factor SRM1-like | ||||
Swissprot | Q9FNN6 | 9e-83 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A2U1NKD9 | 1e-124 | A0A2U1NKD9_ARTAN; Duplicated homeodomain-like superfamily protein | ||||
STRING | EMJ24454 | 4e-94 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-78 | MYB family protein |
Publications ? help Back to Top | |||
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