PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan019708
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family HSF
Protein Properties Length: 156aa    MW: 17260.1 Da    PI: 10.3571
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-47783PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1124.2e-35101002101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y +++d++++++isw+ +g++fvv+++ +fa+++Lp+ Fkh+nf+SFvRQLn+YgF+k+  ++         weF++++F++g+k+ll +i+
     Aan019708  10 FLTKTYLLVDDPATDDIISWNGDGTTFVVWKTADFARDLLPNSFKHNNFSSFVRQLNTYGFRKTVPDK---------WEFANENFRRGQKDLLIEIR 97 
                   9***************************************************************9999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
     Aan019708  98 RRK 100
                   *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-37394IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-56699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.43E-33799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.7E-311099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-191033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-194860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-196173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MTHRSVPAPF LTKTYLLVDD PATDDIISWN GDGTTFVVWK TADFARDLLP NSFKHNNFSS  60
FVRQLNTYGF RKTVPDKWEF ANENFRRGQK DLLIEIRRRK IVASSQANAN GKPAGDIGPT  120
TSPSNSRDTL GSSSTSSPGS KNPGSVDTTN HGKIRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-2559925129Heat shock factor protein 1
5d5v_B4e-2559925129Heat shock factor protein 1
5d5v_D4e-2559925129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.111080.0trichome
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023767909.14e-79heat shock factor protein HSF24-like
SwissprotP223357e-66HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A2R2Z9G91e-92A0A2R2Z9G9_CHRMO; HSFB1
TrEMBLA0A2U1NV811e-92A0A2U1NV81_ARTAN; Heat shock factor (HSF)-type, DNA-binding
STRINGEOX914073e-76(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-56heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]