PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan019167
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB_related
Protein Properties Length: 537aa    MW: 60733.1 Da    PI: 9.7694
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-175160990PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-07436485147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
        Aan019167 436 RRPFSVSEVEALVEAVERLGTGRWRDVKIRAFddaKHRTYVDLKDKWKTL 485
                      678999********************9999999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.75E-7259336IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.908.7E-4260332No hitNo description
PROSITE profilePS500538.764262332IPR000626Ubiquitin domain
PROSITE profilePS5129414.706431490IPR017930Myb domain
SMARTSM007174.8E-7435488IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-9436486IPR009057Homeodomain-like
CDDcd116601.66E-16437487No hitNo description
SuperFamilySSF466895.2E-15437517IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MVLQKMLEYG FNGYQVPPIP RAPRSARKRV PSWKKNEDHN KMCAFDLLAT VAGKLSEGDD  60
SADKINREES KVVKDSMVKT EIDYLKANVC DQESCNKSFF VSEIIKAPVR DTFSGSASGI  120
TVSDFKIEGT NNKEVINEAP ENGKPPVVNN VDCNLKLVIR DDDEKSCGHT QSHTLNNKPF  180
RAPPRIGDRR IRRLSAYKQW RAASNTDMYR NKNSCYKYQR SIRDYPFKKR RLYQFDSPSI  240
SNDQSDSIED GSSLSAVHDS HVKLKIKSFK VPEFFIEIPE TATVSSLKRT VMEAVTAIFS  300
GELHVGVMLQ GKRIRDDNKT LLQTGICHDN VLDALGFTLE SNELQVEDLP IVPLTARPKP  360
LSRYSPPPPT VANQLVIQQK APDSPVTNSR DIMESDHGMS VDSRALVTVP SMNAGALAVG  420
PVRKFKRAEV GQRRIRRPFS VSEVEALVEA VERLGTGRWR DVKIRAFDDA KHRTYVDLKD  480
KWKTLVHTAR ISPQQRRGEP VPQELLDRVL SAHGYWSHHQ AKNQFKHQLQ TETCRLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-524235264107Telomere binding protein TBP1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022037298.10.0telomere repeat-binding protein 5-like isoform X1
RefseqXP_022037299.10.0telomere repeat-binding protein 5-like isoform X1
RefseqXP_022037300.10.0telomere repeat-binding protein 5-like isoform X1
RefseqXP_022037301.10.0telomere repeat-binding protein 5-like isoform X1
RefseqXP_022037302.10.0telomere repeat-binding protein 5-like isoform X1
SwissprotQ6R0E31e-126TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A2U1LMT90.0A0A2U1LMT9_ARTAN; Homeodomain-like, Ubiquitin-related domain protein
STRINGXP_006424852.11e-158(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-117TRF-like 2