PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan019070 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | C2H2 | ||||||||||||
Protein Properties | Length: 191aa MW: 21245.3 Da PI: 9.3921 | ||||||||||||
Description | C2H2 family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.5e-05 | 23 | 45 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Aan019070 23 YTCTFCRREFRSAQALGGHMNVH 45 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.76E-6 | 20 | 50 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.0E-4 | 21 | 48 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0066 | 23 | 45 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.3E-5 | 23 | 46 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.157 | 23 | 50 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 25 | 45 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
XEVKAFAEDT GNIMGTTWPP RSYTCTFCRR EFRSAQALGG HMNVHRRDRA RLHQAQPNFK 60 NPNLPSPSSS TLLINPTQEL VANGGLCLLY SLPNPNVIFN HSSLDNELGN HSSFLSITPH 120 PSTENFMNFQ ASFGTRSFNS SLSSFSNTKT STSTNFQRPQ KDSLDNKRKK TDSTIEGIDL 180 ELRLGCNSRA S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 8e-14 | 18 | 45 | 2 | 29 | superman protein |
2l1o_A | 8e-14 | 18 | 45 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Aan.18752 | 0.0 | leaf |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023736264.1 | 7e-93 | transcriptional regulator SUPERMAN-like isoform X2 | ||||
Refseq | XP_023736265.1 | 1e-93 | transcriptional regulator SUPERMAN-like isoform X3 | ||||
TrEMBL | A0A2U1NLG0 | 1e-135 | A0A2U1NLG0_ARTAN; Zinc finger C2H2-type/integrase DNA-binding domain-containing protein | ||||
STRING | evm.model.supercontig_239.1 | 2e-53 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 7e-28 | C2H2 family protein |