PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan018543
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GRAS
Protein Properties Length: 335aa    MW: 37904.4 Da    PI: 6.8503
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41944420PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-286160990PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.92.3e-94333432374
       GRAS  32 spdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaL 128
                sp g+p++R+a+yf+eAL   +++    + + ++p+ t++++    + ++ a+k fse+sP+++f+++t+Nqa+le+++g +++HiiDfdi++G+QW +L
  Aan018543   3 SPIGKPFERAAFYFKEALTLLVNS----IISNVNPQLTQNMSpfsLIYKIGAYKSFSEISPFVQFANFTCNQALLESLNGYDHIHIIDFDIGYGGQWSSL 98 
                899********************9....55566666655555555999**************************************************** PP

       GRAS 129 lqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL..rvkpgEalaVnlvlqlhrlldesvsleserde 226
                +q+La R++g  sl+iT+++sp ++++ el  t+e+L +fA+e++v f+f+++  + + +   ++L  +v+ +Ea+aVn+ +  h l ++++++++    
  Aan018543  99 MQELALRSNGVSSLKITAFASPLTHDQLELGLTRENLIHFANEINVGFDFDIVNID-VLAGASWSLpfSVSDNEAIAVNFPI--HVLSNHQTQIPN---- 191
                ****************************************************7444.444457777447777********99..777766777777.... PP

       GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
                vL++vk+l+Pk+vv v++ +d+++ ++ +++++al+ ys l++sl+a   ++ +  +k+Er+l++++i+++v  +        e+ ++Wr+ + +aGF+p
  Aan018543 192 VLRFVKNLNPKIVVSVDRGCDRTDLPYSNHLIHALQSYSNLLESLDAV-NANLDSLQKIERFLVQPAIEKIVLGRFLY----PEKTQHWRSLFLSAGFSP 286
                *********************************************887.46669999***************987776....9***************** PP

       GRAS 327 vplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                + +s+++++qa++l++++++++++ve+++  lvl+W++r+Lvs+SaWr
  Aan018543 287 LLFSNFTESQAECLVKRTPVREFHVEKRRSLLVLCWQRRELVSASAWR 334
                ********************9**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.4021314IPR005202Transcription factor GRAS
PfamPF035148.0E-923334IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
QISPIGKPFE RAAFYFKEAL TLLVNSIISN VNPQLTQNMS PFSLIYKIGA YKSFSEISPF  60
VQFANFTCNQ ALLESLNGYD HIHIIDFDIG YGGQWSSLMQ ELALRSNGVS SLKITAFASP  120
LTHDQLELGL TRENLIHFAN EINVGFDFDI VNIDVLAGAS WSLPFSVSDN EAIAVNFPIH  180
VLSNHQTQIP NVLRFVKNLN PKIVVSVDRG CDRTDLPYSN HLIHALQSYS NLLESLDAVN  240
ANLDSLQKIE RFLVQPAIEK IVLGRFLYPE KTQHWRSLFL SAGFSPLLFS NFTESQAECL  300
VKRTPVREFH VEKRRSLLVL CWQRRELVSA SAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-37633437375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024992475.10.0scarecrow-like protein 6
SwissprotO813161e-139SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2U1KTQ50.0A0A2U1KTQ5_ARTAN; Transcription factor GRAS
TrEMBLA0A2U1PW810.0A0A2U1PW81_ARTAN; Transcription factor GRAS
STRINGPGSC0003DMT4000667991e-178(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-142GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]