PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan018330

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

MYB_related

Protein Properties

Length: 364aa MW: 39361.6 Da PI: 7.3432

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41954240	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-88701	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.9	5.5e-14	112	156	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++lG+g+W+ Iar + Rt+ q+ s+ qky Aan018330 112 PWTEEEHRLFLLGLQKLGKGDWRGIARNYVLSRTPTQVASHAQKY 156 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.242	105	161	IPR017930	Myb domain
SuperFamily	SSF46689	3.37E-16	107	160	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.2E-18	108	160	IPR006447	Myb domain, plants
SMART	SM00717	1.8E-11	109	159	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-11	109	155	IPR009057	Homeodomain-like
CDD	cd00167	5.69E-10	112	157	No hit	No description
Pfam	PF00249	3.3E-11	112	156	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MTRRCSHCSN NGHNSRTCPS RDTGTGSGVK LFGVRLTEGG GSIMKKSASM GNLSALYHPS 60 SSSSSPVAXV SPNHGGSPAS SDRIVGGGGG GGYLSDDPKR RAVAVDRKKG TPWTEEEHRL 120 FLLGLQKLGK GDWRGIARNY VLSRTPTQVA SHAQKYFIRQ CNSTRRKRRS SLFDMAPDTV 180 EESPEDQFML PPAEGADHPD NDPCSLKLSL NPDPDQSMEA AAPTETLEQD IKEETSTTVN 240 SDQLPPTMPA FYPAYIPIPF QVWPSTMTQL EEPTNNNNTG PDGTYHRVLK PIPVLSKEPV 300 NLDELVGKSS QLSLKDTDHH YIEPSSLSLT LMTEPSRQSA FHASIPVVGS SGKDKGVGNG 360 FRAI

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MTRRCSHCSN NGHNSRTCPS RDTGTGSGVK LFGVRLTEGG GSIMKKSASM GNLSALYHPS  60
SSSSSPVAXV SPNHGGSPAS SDRIVGGGGG GGYLSDDPKR RAVAVDRKKG TPWTEEEHRL  120
FLLGLQKLGK GDWRGIARNY VLSRTPTQVA SHAQKYFIRQ CNSTRRKRRS SLFDMAPDTV  180
EESPEDQFML PPAEGADHPD NDPCSLKLSL NPDPDQSMEA AAPTETLEQD IKEETSTTVN  240
SDQLPPTMPA FYPAYIPIPF QVWPSTMTQL EEPTNNNNTG PDGTYHRVLK PIPVLSKEPV  300
NLDELVGKSS QLSLKDTDHH YIEPSSLSLT LMTEPSRQSA FHASIPVVGS SGKDKGVGNG  360
FRAI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024970566.1	1e-177	transcription factor MYBS3
TrEMBL	A0A2U1N242	0.0	A0A2U1N242_ARTAN; Homeodomain-like protein
STRING	AES67930	1e-114	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-68	MYB_related family protein