PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan018266 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | MYB_related | ||||||||||||
Protein Properties | Length: 226aa MW: 24351.8 Da PI: 9.3049 | ||||||||||||
Description | MYB_related family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.3 | 1.8e-13 | 76 | 120 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + +R++ q+ s+ qky Aan018266 76 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRSPPQVASHAQKY 120 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 5.487 | 1 | 20 | IPR017884 | SANT domain |
PROSITE profile | PS51294 | 17.217 | 69 | 125 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-15 | 71 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-11 | 73 | 123 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 7.9E-17 | 73 | 124 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 4.1E-10 | 74 | 119 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.5E-11 | 76 | 120 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.12E-10 | 76 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
PGKTAEEVKH HYELLVDDLD RIESGVVPLP CYTASSDDSG SRGGDDGTSK KSGNLRHHSS 60 EGKASKADQE RRKGVAWTED EHRLFLLGLE KYGKGDWRSI SRNFVVTRSP PQVASHAQKY 120 FIRQNSLNRD RRRTSIHDIT SVNNGDTSSP ITGQTNASPA GKSSNQPPHA TSDGGTTVGL 180 PLAVGTPVNI TPQSHMAYGI IAPGHLGPMT YPGPMAYPTS NTSSHR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024994822.1 | 1e-113 | transcription factor SRM1 isoform X1 | ||||
Refseq | XP_024994823.1 | 1e-113 | transcription factor SRM1 isoform X1 | ||||
Refseq | XP_024994824.1 | 1e-113 | transcription factor SRM1 isoform X1 | ||||
Swissprot | Q9FNN6 | 3e-77 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A2U1PWH8 | 1e-163 | A0A2U1PWH8_ARTAN; Homeodomain-like transcriptional regulator | ||||
STRING | XP_009613368.1 | 4e-92 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 5e-73 | MYB family protein |
Publications ? help Back to Top | |||
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