PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan017907

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

HSF

Protein Properties

Length: 277aa MW: 31692.8 Da PI: 9.2995

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-714160993	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	82	8.7e-26	10	105	2	96
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX.XXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF.kkgkkellek 96 F++k+y++++d++l++li+w +++nsf+v+d+ +f++++Lp yFkh+nf+SF+RQLn+Y + + +++ ++++++F+++++ kk +k+ l++ Aan017907 10 FVMKTYQMVNDSSLDNLIRWGTSNNSFIVVDSLDFSQRLLPAYFKHNNFSSFIRQLNTYKSGSRSMGIRERVVSKRTNSFAKEHWkKKANKNRLKQ 105 9**********************************************************8777777666666679999999999845666777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.4E-26	6	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.81E-21	7	70	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	8.4E-26	8	100	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.4E-20	10	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-12	10	33	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-12	48	60	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-12	61	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MESNDVIAPF VMKTYQMVND SSLDNLIRWG TSNNSFIVVD SLDFSQRLLP AYFKHNNFSS 60 FIRQLNTYKS GSRSMGIRER VVSKRTNSFA KEHWKKKANK NRLKQTRLED DEEEDMVNEI 120 ARLKQEQKLL EQELVNMNKR LEATERRPEQ MMSLLCKVAE DPNILQRMML EKGQRSKRLV 180 DKKKQRQLIT PQTVPSCSTS SSSIEIKRED DECYIGGEVR SPPTVWLWNR EGQSGNNHVG 240 GSGSGDTVYF GGGSVDSDVR PPPPPYPFSL LGGGFYN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3hts_B	2e-13	9	68	14	73	HEAT SHOCK TRANSCRIPTION FACTOR
5d5w_B	2e-13	8	68	2	62	Putative transcription factor
5d5x_B	2e-13	8	68	2	62	Putative transcription factor
5d5x_E	2e-13	8	68	2	62	Putative transcription factor
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Aan.3157	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024960526.1	1e-94	heat stress transcription factor C-1-like
Swissprot	Q9LV52	1e-57	HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBL	A0A2U1QCM6	1e-162	A0A2U1QCM6_ARTAN; Winged helix-turn-helix DNA-binding domain, Heat shock transcription factor family
STRING	cassava4.1_010201m	2e-72	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	5e-53	heat shock transcription factor C1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guan Q,Yue X,Zeng H,Zhu J The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. Plant Cell, 2014. 26(1): p. 438-53 [PMID:24415771]