PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan017084
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB_related
Protein Properties Length: 281aa    MW: 31316.5 Da    PI: 9.6742
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41889634PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-134355PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.28e-13555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE++ l  +v+++G+g Wk I +  +       R+  ++k++w++
        Aan017084  5 KQKWTQEEEDALRAGVAKHGTGKWKNIQKDPQfnphlYSRSNIDLKDKWRN 55
                     79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.326161IPR017930Myb domain
SuperFamilySSF466892.44E-16258IPR009057Homeodomain-like
SMARTSM007174.5E-9459IPR001005SANT/Myb domain
PfamPF002497.7E-10555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-15556IPR009057Homeodomain-like
CDDcd116603.38E-21656No hitNo description
SuperFamilySSF467859.8E-15119199IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.0E-14119184IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.199121189IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.109.1E-13121187IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.7E-9124182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGNPKQKWTQ EEEDALRAGV AKHGTGKWKN IQKDPQFNPH LYSRSNIDLK DKWRNMSVSA  60
NGQGPREKAR TPKPKGADSP ATPMPISQVP GSSSVAIVPA DPVPTDVIME DSSKCLLDGK  120
TASKYNAMIY EALSTLKDPS GSDTNAIVSF IEQRHEVVPN FRRLLTARLR RLVQQEKLEK  180
VQNCYRLRRE ALNGTRDPIP KPKENRPSLS QSNRHLGETL EQAAVAAAYK VAEAENKSFV  240
AAEAVKELER VTRMAEEAEA FLQLVQQIYE RCATGEVVKV Q
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.183540.0leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021990563.11e-151telomere repeat-binding factor 4-like
TrEMBLA0A2U1N8K00.0A0A2U1N8K0_ARTAN; Single myb histone 3
STRINGXP_009757029.11e-115(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-62MYB_related family protein