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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan017050 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | CAMTA | ||||||||||||
Protein Properties | Length: 321aa MW: 36874 Da PI: 5.5234 | ||||||||||||
Description | CAMTA family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 161.5 | 1.6e-50 | 30 | 145 | 3 | 117 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 +e k+rwl+++ei+aiL n++ ++++ ++ + pksg+++L++rk++r+fr+DG +wkkkkdgktv+E+he+LKvg+ e +++yYah+e++ptf rrcywl Aan017050 30 EEaKTRWLRPNEIHAILCNHKYFTIHVKPVNMPKSGTVVLFDRKMLRNFRRDGRNWKKKKDGKTVKEAHEHLKVGSDERIHVYYAHGEDQPTFVRRCYWL 129 5559************************************************************************************************ PP CG-1 102 Leeelekivlvhylev 117 L+++le+ivlvhy+++ Aan017050 130 LDKKLEHIVLVHYRDT 145 **************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 74.259 | 25 | 151 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.9E-72 | 28 | 146 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 2.2E-45 | 31 | 144 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MEAAVQSQLV GSEIHGFKTM QDLDVPTMFE EAKTRWLRPN EIHAILCNHK YFTIHVKPVN 60 MPKSGTVVLF DRKMLRNFRR DGRNWKKKKD GKTVKEAHEH LKVGSDERIH VYYAHGEDQP 120 TFVRRCYWLL DKKLEHIVLV HYRDTEEQGS PNVESHSSSD PPTSWNLSEG NDGVEQLYNV 180 EPNETIINHE KRLHEINTLE WEELVIPDES NSTSITPQGG NISYFDQDDQ YGLNGLVDAM 240 EPKHVNSSTG ILETMGIHGI KNQDSFGRWM NYAMTDSPEI VDPNLIPEPL VPAGRENVRT 300 PSGYNDQLHS LQQIFTINEV X |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Aan.20228 | 0.0 | trichome |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023765664.1 | 1e-157 | calmodulin-binding transcription activator 6-like | ||||
Swissprot | O23463 | 6e-87 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A2U1P956 | 0.0 | A0A2U1P956_ARTAN; IQ motif, EF-hand binding site | ||||
STRING | XP_008458373.1 | 1e-111 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16940.1 | 1e-100 | calmodulin binding;transcription regulators |
Publications ? help Back to Top | |||
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