PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan016124

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

MYB_related

Protein Properties

Length: 300aa MW: 32607.5 Da PI: 8.2292

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-31034	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.6	1.2e-17	45	89	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eE+ +++ a++ +G++ W++Iar ++ gRt++ +k++w++ Aan016124 45 RKPFTHEEERIILSAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 89 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.461	1	39	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.1E-11	20	52	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.76E-24	23	92	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.153	40	94	IPR017930	Myb domain
SMART	SM00717	1.8E-16	44	92	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-15	45	89	IPR001005	SANT/Myb domain
CDD	cd00167	8.34E-13	47	90	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.0E-20	53	91	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
XFVIQIGLHF RPHGIGLSLP KASPGRSGKS CRLRWCNQLD PALKRKPFTH EEERIILSAH 60 AIHGNKWAAI ARLLPGRTDN AIKNHWNSTL RRRGVGFGRF NIGSGNTMDE AATASIDRSK 120 ASSEETLSCG DVNSFKCVDG VDVTSDHYVE NSQLNSDPPT LFRPKPRVSA FNVYNSDDSS 180 ETQGILIQSS KADIGIGKLL EGERLVPHQC GYGCCGMSTL ANSKKSLLGP EFVDYAEQPC 240 FPSHELAALA TDISNIAWLR SGLENNSVKP TDNVIPKNVH SMPVSWQPST AQPANVGSLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-26	19	93	33	107	B-MYB
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024981890.1	1e-146	transcription factor MYB1-like
Swissprot	Q42575	2e-79	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A2U1PT20	0.0	A0A2U1PT20_ARTAN; Homeodomain-like protein
STRING	XP_006429252.1	1e-106	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-81	myb domain protein 1

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]