PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan016124 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | MYB_related | ||||||||
Protein Properties | Length: 300aa MW: 32607.5 Da PI: 8.2292 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 45 | 89 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eE+ +++ a++ +G++ W++Iar ++ gRt++ +k++w++ Aan016124 45 RKPFTHEEERIILSAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 89 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.461 | 1 | 39 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 20 | 52 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.76E-24 | 23 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.153 | 40 | 94 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-16 | 44 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 45 | 89 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.34E-13 | 47 | 90 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-20 | 53 | 91 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
XFVIQIGLHF RPHGIGLSLP KASPGRSGKS CRLRWCNQLD PALKRKPFTH EEERIILSAH 60 AIHGNKWAAI ARLLPGRTDN AIKNHWNSTL RRRGVGFGRF NIGSGNTMDE AATASIDRSK 120 ASSEETLSCG DVNSFKCVDG VDVTSDHYVE NSQLNSDPPT LFRPKPRVSA FNVYNSDDSS 180 ETQGILIQSS KADIGIGKLL EGERLVPHQC GYGCCGMSTL ANSKKSLLGP EFVDYAEQPC 240 FPSHELAALA TDISNIAWLR SGLENNSVKP TDNVIPKNVH SMPVSWQPST AQPANVGSLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 19 | 93 | 33 | 107 | B-MYB |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024981890.1 | 1e-146 | transcription factor MYB1-like | ||||
Swissprot | Q42575 | 2e-79 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | A0A2U1PT20 | 0.0 | A0A2U1PT20_ARTAN; Homeodomain-like protein | ||||
STRING | XP_006429252.1 | 1e-106 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09230.1 | 1e-81 | myb domain protein 1 |
Publications ? help Back to Top | |||
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