PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan015759 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | GRAS | ||||||||||||
Protein Properties | Length: 177aa MW: 19942.8 Da PI: 6.793 | ||||||||||||
Description | GRAS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 153.5 | 1.9e-47 | 43 | 176 | 1 | 136 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lLl+cA++v+sg++e a+ +L ++s+lasp+gd+mqR+a+yf+eALa+r++++++++ykal++++ s se++ ++k+f+e +P+lk++++++Nq Aan015759 43 LIHLLLTCAKHVASGNFEHANIALDQISHLASPEGDTMQRIASYFAEALANRILKTWPGIYKALHSTRIS--LASENILVRKMFFEYFPYLKIAFVITNQ 140 689*************************************************************998887..699************************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRp 136 I ea+ege+ vH+iD+++ +++QW aLl+ L++Rp Aan015759 141 VIIEAMEGEKIVHVIDLNAAEPTQWRALLRDLSARP 176 **********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 25.54 | 17 | 177 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.7E-45 | 43 | 176 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MFQDDGSSSV TSTPVQMFPS MSMSPSPYPW LKELKSEERG LCLIHLLLTC AKHVASGNFE 60 HANIALDQIS HLASPEGDTM QRIASYFAEA LANRILKTWP GIYKALHSTR ISLASENILV 120 RKMFFEYFPY LKIAFVITNQ VIIEAMEGEK IVHVIDLNAA EPTQWRALLR DLSARPX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 5e-22 | 26 | 176 | 1 | 153 | Protein SCARECROW |
5b3h_D | 5e-22 | 26 | 176 | 1 | 153 | Protein SCARECROW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023728244.1 | 1e-119 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 9e-77 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A1B0T6T0 | 1e-125 | A0A1B0T6T0_CHRMO; GRAS protein (Fragment) | ||||
TrEMBL | A0A2U1N8W1 | 1e-125 | A0A2U1N8W1_ARTAN; GRAS protein | ||||
STRING | Migut.N02362.1.p | 2e-95 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 8e-74 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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