PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan015673

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

HB-other

Protein Properties

Length: 218aa MW: 24338.1 Da PI: 9.0853

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-73200	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.1	6.2e-18	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++ql +Le++F++++yps++++ e A+++gL+e+qV+ WF+ rR k+k+ Aan015673 20 PKRIHKTPKQLIALENFFNEHKYPSEAMKLEVAESIGLSEKQVSGWFCHRRLKDKN 75 689999***********************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.131	16	76	IPR001356	Homeobox domain
SMART	SM00389	3.6E-18	18	80	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.69E-17	18	81	IPR009057	Homeodomain-like
Pfam	PF00046	1.4E-15	20	74	IPR001356	Homeobox domain
CDD	cd00086	2.62E-16	21	77	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.3E-19	21	75	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MEEPQGVRAY ENGALLDKKP KRIHKTPKQL IALENFFNEH KYPSEAMKLE VAESIGLSEK 60 QVSGWFCHRR LKDKNKSPND EIQTHGKQDR SSGVIQDRGS GLRQDSCGST KQGDNKHFEP 120 KEVESRRFTA GDLFPTEVPF DHVNQHNNNM HMDDDTSSGS SSPLKDKFHP QNVDRLGTLT 180 SIYPTHSDVK SVKGRTGPSG FLKVKGQVEN AAITAVKG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024966889.1	1e-108	uncharacterized protein LOC112506802 isoform X1
Refseq	XP_024966970.1	1e-108	homeobox-DDT domain protein RLT1 isoform X2
TrEMBL	A0A2U1NWU4	1e-155	A0A2U1NWU4_ARTAN; Homeodomain-containing protein
STRING	Solyc12g099760.1.1	3e-70	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	5e-47	HB-other family protein