PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan015099 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | bHLH | ||||||||
Protein Properties | Length: 251aa MW: 27928.1 Da PI: 10.2571 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.5 | 1.8e-16 | 71 | 117 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P+a K +Ka++L +++eY+k+Lq Aan015099 71 VHNQSERKRRDKINQKMKTLQKLVPNA-----NKTDKASMLDEVIEYLKQLQ 117 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-17 | 65 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.14E-18 | 65 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.447 | 67 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.1E-14 | 71 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.12E-15 | 72 | 120 | No hit | No description |
SMART | SM00353 | 1.0E-16 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
ERELGPKGFT STSTGSPENT VSGKQQSTKS TSPDEHDSVC HSRPQKNEVD EKKKGKGKSS 60 ISTKRSRAAA VHNQSERKRR DKINQKMKTL QKLVPNANKT DKASMLDEVI EYLKQLQGQI 120 NMINRMNMSP MMMPLAMQQQ QFQMAMMNPM GLGMGMGMGM GMPGVMDLNS ISANRPSIPG 180 MPPVFHPSNF MQPAMASWDM NTTSDQVPNH NDQMAAFLAC QSQPMTMEGY SRMAAMFQQM 240 QNQPTYPGLK N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 75 | 80 | ERKRRD |
2 | 76 | 81 | RKRRDK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Aan.19321 | 0.0 | trichome |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022002675.1 | 1e-117 | transcription factor UNE10-like | ||||
Swissprot | Q8GZ38 | 8e-63 | UNE10_ARATH; Transcription factor UNE10 | ||||
TrEMBL | A0A2U1N180 | 0.0 | A0A2U1N180_ARTAN; Myc-type, basic helix-loop-helix (BHLH) domain-containing protein | ||||
STRING | XP_002511647.1 | 2e-89 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 1e-49 | bHLH family protein |
Publications ? help Back to Top | |||
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