PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan014963

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

BBR-BPC

Protein Properties

Length: 308aa MW: 34770 Da PI: 9.229

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55101143	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-135529	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	353.5	4.5e-108	1	308	1	301
GAGA_bind 1 mdddgsrernkg.yyepa.aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.... 92 mdd+g++ r+ g + +p+ + l +++ +q+m+++aerda+i+ernla+sekk a+aerd+a+lqrd+a+aern a++erdn++++l+++en+++ Aan014963 1 MDDNGHH-RENGrQKQPQgQWLMQHQpsMKQIMTIMAERDAAIQERNLAMSEKKTALAERDIALLQRDSAIAERNSAIMERDNAIATLQYRENNSMsnsn 99 8898885.6666344444544444431145***********************************************************999878999 PP GAGA_bind 93 ....salpvgvqvlsgtksidslqqlsepqle.dsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaders 187 s++p+g+q+++++k++++ qq +++ + + + +++e+ k+ +++ ++++ + +++kk++r++k k + + +k +++++ +++ + Aan014963 100 nntsSSCPPGCQISRNVKHVHHPQQYLQEDANlPASPPAPEQAKSRKTKRPKETKAI---TTTKKTSRSRKVKLECDD-LNKVLYDDTHDW-DSGDGGSN 194 999999**************943322220222233444433333322222222...222322333333333332.233222222222.22223569 PP GAGA_bind 188 kaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkd 287 k+e+k++dl+ln+v++D++t+P+PvCsCtG+ r CYkWGnGGWqS+CCttt+SvyPLP +++r+aR++grKmS+++f+kl+++L++eG+dlsnpvDLk+ Aan014963 195 KQEWKDQDLGLNQVTYDDTTMPIPVCSCTGVFRPCYKWGNGGWQSSCCTTTLSVYPLPSLPNKRHARVGGRKMSGSVFNKLINRLSSEGHDLSNPVDLKE 294 ************************************************************************************************ PP GAGA_bind 288 hWAkHGtnkfvtir 301 hWAkHGtn+++ti+ Aan014963 295 HWAKHGTNRYITIK 308 ***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	1.7E-95	1	308	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	1.8E-148	1	308	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MDDNGHHREN GRQKQPQGQW LMQHQPSMKQ IMTIMAERDA AIQERNLAMS EKKTALAERD 60 IALLQRDSAI AERNSAIMER DNAIATLQYR ENNSMSNSNN NTSSSCPPGC QISRNVKHVH 120 HPQQYLQEDA NLPASPPAPE QAKSRKTKRP KETKAITTTK KTSRSRKVKL ECDDLNKVLY 180 DDTHDWDSGD GGSNKQEWKD QDLGLNQVTY DDTTMPIPVC SCTGVFRPCY KWGNGGWQSS 240 CCTTTLSVYP LPSLPNKRHA RVGGRKMSGS VFNKLINRLS SEGHDLSNPV DLKEHWAKHG 300 TNRYITIK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:21435046}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024963311.1	0.0	protein BASIC PENTACYSTEINE6
Refseq	XP_024963312.1	0.0	protein BASIC PENTACYSTEINE6
Swissprot	Q8L999	1e-138	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A2U1L8C2	0.0	A0A2U1L8C2_ARTAN; Basic pentacysteine 6
STRING	GLYMA04G02860.1	1e-156	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	1e-130	basic pentacysteine 6