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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan014662 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | C2H2 | ||||||||
Protein Properties | Length: 215aa MW: 24431.6 Da PI: 9.1164 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.9 | 2e-06 | 70 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Aan014662 70 YVCEICNQGFQRDQNLQMHRRRH 92 9*********************9 PP | |||||||
2 | zf-C2H2 | 16.7 | 2e-05 | 147 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ Aan014662 147 WVCDKCSKGYAVQSDYKAHLKTC 169 58*******************98 PP | |||||||
3 | zf-C2H2 | 11 | 0.0014 | 177 | 194 | 5 | 22 |
TTTEEESSHHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHirt 22 dCg++Fsr +++ H+ Aan014662 177 DCGRVFSRVESFIEHQDA 194 9**************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.91E-6 | 69 | 92 | No hit | No description |
Pfam | PF12874 | 0.0088 | 70 | 88 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 70 | 92 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.97 | 70 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 210 | 111 | 141 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.5E-5 | 138 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.91E-6 | 142 | 167 | No hit | No description |
SMART | SM00355 | 65 | 147 | 174 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MLDNHHQHHH HFATSSGPST APSSSSDLFI SSDNGLGHPN KRKRRPAGTP DPDAEVVSLS 60 PKTLLESDQY VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK RDSPEIKKRV FVCPEPSCLH 120 HDPCHALGDL VGIKKHFRRK HSNNKQWVCD KCSKGYAVQS DYKAHLKTCG TRGHSCDCGR 180 VFSRVESFIE HQDACTVRRV HPDLPAFQQA CSSRT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 9e-18 | 145 | 195 | 5 | 55 | Zinc finger protein JACKDAW |
5b3h_F | 9e-18 | 145 | 195 | 5 | 55 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression levels gradually decrease with aging in both the shoot and root vasculature. {ECO:0000269|PubMed:16813575}. | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in the endodermis, the gravity-sensing tissue in inflorescence stems. Mostly present in stems and flowers, and, to a lower extent, in seedlings, hypocotyls, roots and the shoot apical meristem (SAM). {ECO:0000269|PubMed:16813575}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024961830.1 | 1e-138 | protein SHOOT GRAVITROPISM 5-like | ||||
Swissprot | F4IPE3 | 1e-112 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A2U1NEP1 | 1e-157 | A0A2U1NEP1_ARTAN; Uncharacterized protein | ||||
STRING | POPTR_0008s13980.1 | 1e-125 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 1e-114 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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