PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan014446
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family BBR-BPC
Protein Properties Length: 298aa    MW: 33208.8 Da    PI: 10.2794
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41936556PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-479160996PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind308.91.7e-9412981301
  GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssia.erdaki....rernlalsekkaav..aerd..............maflqrdkalaernkalverdn 79 
                mdddg + rn+gyyep  s+ke+lglqlms +   rd+k+    re+ + + ++++++  +                 m++ +rd +++   +++++  n
  Aan014446   1 MDDDGLNIRNWGYYEPP-SFKEHLGLQLMSPMIdHRDTKPflspREHPI-MVNPNGVMpyH--HnhlrnsvvnesplpMQY-MRDGWIQRDRHHHMHPGN 95 
                9****988********9.***********987758****9999777666.77777766422..224677889999999999.999999984444444433 PP

  GAGA_bind  80 kllalllvenslasalpvgvqvlsgtksidslqqlse.....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkseks 174
                +   l++               +sg++s+++++ql+        +edsav             +    +  +  k++++   ++pk+++akk++k+s+ +
  Aan014446  96 NNYPLIH--------------DSSGSQSMHMMHQLDPsknhgMMMEDSAVSGGGD------SGSGGSGSGVQL-KRRSGPAVANPKQPRAKKPRKTSSIP 174
                3333333..............2334444444444211000113333333331111......112222233333.33346678999**********99999 PP

  GAGA_bind 175 kkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274
                k++ ++++   rsk+ k+s+d+v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtttiS+yPLP+stkrrgaRiagrKmSqgafkk+LekLa+
  Aan014446 175 KENGNPSG---RSKTVKRSMDVVINGIDMDISGIPIPVCSCTGVQQQCYRWGSGGWQSACCTTTISMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAS 271
                88888877...79*************************************************************************************** PP

  GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301
                e y+++n++DL+ hWAkHGtnkfvtir
  Aan014446 272 ESYNFANAIDLRLHWAKHGTNKFVTIR 298
                **************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.8E-1471298IPR010409GAGA-binding transcriptional activator
PfamPF062173.2E-1011298IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDDDGLNIRN WGYYEPPSFK EHLGLQLMSP MIDHRDTKPF LSPREHPIMV NPNGVMPYHH  60
NHLRNSVVNE SPLPMQYMRD GWIQRDRHHH MHPGNNNYPL IHDSSGSQSM HMMHQLDPSK  120
NHGMMMEDSA VSGGGDSGSG GSGSGVQLKR RSGPAVANPK QPRAKKPRKT SSIPKENGNP  180
SGRSKTVKRS MDVVINGIDM DISGIPIPVC SCTGVQQQCY RWGSGGWQSA CCTTTISMYP  240
LPMSTKRRGA RIAGRKMSQG AFKKVLEKLA SESYNFANAI DLRLHWAKHG TNKFVTIR
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024988860.11e-150protein BASIC PENTACYSTEINE1-like
SwissprotQ9SKD03e-89BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A2U1KTK90.0A0A2U1KTK9_ARTAN; GAGA-binding transcriptional activator
STRINGXP_009608500.11e-116(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.23e-86basic pentacysteine1