PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan014418
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C2H2
Protein Properties Length: 673aa    MW: 75049.9 Da    PI: 6.4091
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41966371PU_unrefUnigeneView CDS
gnl|UG|Aan#S55032085PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-129860PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00041558583123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                +kC    C+ sF++k +L+ H ++ +
  Aan014418 558 HKCDieGCKLSFKTKTELRLHRKNrC 583
                789999***************99866 PP
2zf-C2H210.80.0016582605223
                EET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                +Cp   Cgk F+++ + + H r+H
  Aan014418 582 RCPhvGCGKKFKSHRYAVIHVRVH 605
                69999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003559.3558580IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.053581610IPR007087Zinc finger, C2H2
SMARTSM003550.047581605IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280583605IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.2E-10609635IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.676611640IPR007087Zinc finger, C2H2
SMARTSM003550.0035611635IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280613635IPR007087Zinc finger, C2H2
SuperFamilySSF576671.8E-10621664No hitNo description
Gene3DG3DSA:3.30.160.605.6E-11636664IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.1641667IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.972641673IPR007087Zinc finger, C2H2
PROSITE patternPS000280643667IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
XSAYHAVLWD LESLSPSVIT ESDSKNIDDI HVKNDNNLDT ETVVNIEDED MSSDFQIDSG  60
SLPCVACGVL GYPFMSVIQP TTKMLIDEMP VTGHGVELVD SKDRSLEAST NSCEMNVEKG  120
WNISNGFLRP QIFCLKHASK VMELLDSMGG AKLLIICHSD FLKIKIQVSA IAEQIGSTFR  180
YNEVRLDEAT QDDLDLINLA IDNEQDDESV EDWTLKLNVN LRQSVKLRPK SSPDKIHNAL  240
IMDALFADAP TSSVDSRTMI FQWQATKSRS NRKLNSSIKK FSKTVDVEVI DNISEAQIPK  300
KGGSLIQYSR RKFKSKRQDT VANLSKDRNE DDLLVSGDLS TPGNPVTQQE KEDSVLSQVG  360
VDVIAPLVAE DAEAHTSMEM EGGSESCATT LEKSGTEKGE ESDLQNEISF VATDNGSLEQ  420
GSEDGLMQED TELTKDGGSS ADEPVIDSND NVKEDHVTDN DENNHVSNSK SGGKRKREVE  480
LLQREEKSDF DGFVKSPCEG LRPRGGKDSL KGGINISTKT IPEKPTKKSK PSNVTEKHAK  540
KPKASNVKTS EKTEHKSHKC DIEGCKLSFK TKTELRLHRK NRCPHVGCGK KFKSHRYAVI  600
HVRVHEDHRP LKCTWKGCKM TFKWAWARTE HIRVHTGERP YKCSVEGCGL NFRFVSDFSR  660
HRRKTGHNVH VKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A7e-5055766922134Lysine-specific demethylase REF6
6a58_A7e-5055766922134Lysine-specific demethylase REF6
6a59_A7e-5055766922134Lysine-specific demethylase REF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.102720.0trichome
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024978103.10.0probable lysine-specific demethylase ELF6 isoform X1
RefseqXP_024978112.10.0probable lysine-specific demethylase ELF6 isoform X2
TrEMBLA0A2U1QEP70.0A0A2U1QEP7_ARTAN; JmjC domain-containing protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.17e-61C2H2 family protein