PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan014185
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family bHLH
Protein Properties Length: 482aa    MW: 54968.5 Da    PI: 5.9845
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55192211PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-159612PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.00014134180632
                HHHHHHHHHHHHHHHHHHHCTSCC.C..................... CS
        HLH   6 nerErrRRdriNsafeeLrellPk.as...................k 32 
                 ++E+r+R ++ + f+  r+ lP+ ++                   +
  Aan014185 134 AIIEQRYRTNVGDLFAHVRKKLPWaDPkivkqlidsklyallgektA 180
                689*********************55466666666666666666661 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045581.1E-524160IPR007639Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal
PfamPF045571.3E-13163255IPR007638Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2
SuperFamilySSF523741.49E-67262480No hitNo description
PfamPF007492.8E-90263481IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
Gene3DG3DSA:3.40.50.6201.6E-34263331IPR014729Rossmann-like alpha/beta/alpha sandwich fold
PRINTSPR009875.9E-8266278IPR000924Glutamyl/glutaminyl-tRNA synthetase
PROSITE patternPS001780269280IPR001412Aminoacyl-tRNA synthetase, class I, conserved site
PRINTSPR009875.9E-8295308IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.90.800.107.2E-43335439No hitNo description
PRINTSPR009875.9E-8440450IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.40.50.6201.6E-34442480IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006425Biological Processglutaminyl-tRNA aminoacylation
GO:0005737Cellular Componentcytoplasm
GO:0004819Molecular Functionglutamine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MVEAIDLFLK IGLDERTAKN TIANNKVTAN LLAVINEAAV TDGCDRSTGN LLYLVATKFP  60
ANALVHRPKL LEYIVSSKIK TPAQLEAAFT FVTVTGSENL DINKFEEACG VGIEVSLEDI  120
ELTVDEIFEE KKSAIIEQRY RTNVGDLFAH VRKKLPWADP KIVKQLIDSK LYALLGEKTA  180
ADNEKPVKKK KEKPAKVEDK STTKEAPEAV PSEEELNPYS IFPAPEENYK VHTEVFFSDR  240
PVLRACNSKA ILEKHLKTTG GMVLTRFPPE PNGYLHIGHA KAMFVDFGLA KDRGGGCYLR  300
FDDTNPEAKK KEYIDHIEEI VGWMGWKPFK ITYTSDYFQD LYDLAVELIR RGCAYVDHQT  360
GDEIKEYREK KMNSPWRERP ISESLKLFND MKEGRIDEGK ATLRMKQDMQ SDNGNMYDLI  420
AYRIKFTPHP HAGDKWCIYP SYDYAHCIVD SLENITHSLS TLEFETRRAS YYWLLDALSL  480
YX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4r3z_C1e-128248128501Glutamine--tRNA ligase
4ye6_A1e-12924815478Glutamine--tRNA ligase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024973761.10.0glutamine--tRNA ligase isoform X1
SwissprotP527800.0SYQ_LUPLU; Glutamine--tRNA ligase
TrEMBLA0A2U1NV430.0A0A2U1NV43_ARTAN; Glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS
STRINGevm.model.supercontig_798.20.0(Carica papaya)