PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan013968
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family DBB
Protein Properties Length: 301aa    MW: 32699.7 Da    PI: 6.03
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-123637PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.52.3e-07447542
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                C+ +e+ e++  C  ++  lC dC ++ H        H++vpl
  Aan013968  4 QCNVCEKVEATVLCCADEAALCSDCDMKVHAAnklaskHQRVPL 47
               7******99*********************66899999999986 PP
2zf-B_box27.46.7e-095285134
   zf-B_box  1 seerkCpeHeekelqlfCedCqqllCedClleeH 34
               s++++C+ ++e    +fC +++ llC++C l+ H
  Aan013968 52 SKMPNCDICQETAGYFFCLEDRALLCRKCDLAVH 85
               5799*******99*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.182147IPR000315B-box-type zinc finger
CDDcd000215.12E-8347No hitNo description
SMARTSM003361.4E-7447IPR000315B-box-type zinc finger
SMARTSM003361.8E-145299IPR000315B-box-type zinc finger
PROSITE profilePS501199.4145299IPR000315B-box-type zinc finger
PfamPF006431.2E-65393IPR000315B-box-type zinc finger
CDDcd000214.23E-95799No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MKIQCNVCEK VEATVLCCAD EAALCSDCDM KVHAANKLAS KHQRVPLSNS NSKMPNCDIC  60
QETAGYFFCL EDRALLCRKC DLAVHTVNPL VSAHQRFLLT GVKVGLEAAD HGSSSSTGKS  120
NSSEKLPKQQ KSHSVPAMNV PVSTTSQVNK PMPAQAAEAG DFEPPKPFSG GASADSMQQW  180
QFEDFLALTD FNSSYNYLDN GSSKANSGKL GESDGSPILR AMEIELDSED CLGQVPDASW  240
AVPEIPSPPT ASGLSWPKTR PHHQHGMVSD TFVPDVSYLP MPNFYESQQN NTGILKRRRN  300
F
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024960531.11e-166B-box zinc finger protein 22
SwissprotQ9SYM25e-90BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A2U1L3130.0A0A2U1L313_ARTAN; Zinc finger, B-box
STRINGXP_009762543.11e-131(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-89light-regulated zinc finger protein 1