PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Aan013617 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | GRAS | ||||||||||||||||
Protein Properties | Length: 212aa MW: 23392.3 Da PI: 4.7293 | ||||||||||||||||
Description | GRAS family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 237.2 | 7e-73 | 5 | 210 | 172 | 374 |
GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 ++v+fe++ +va++l+dle+ +++++ +E++aVn+v++lhrll +++++e+ vL++vk+l+P +++vveqea+hn+ Fl+rf+e+l+yys+lfdsl Aan013617 5 INVEFEYRGFVANSLADLEPGMFDLRDDEVVAVNSVFELHRLLGRPMAVEK----VLDVVKGLKPVILTVVEQEANHNGLVFLDRFTESLHYYSTLFDSL 100 89*****************************************99999999....********************************************* PP GRAS 272 eak......lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkd 364 e++ +se+++ +++++lg++i+nvvaceg +r+erhetl +W+ rl++aGF++v+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++ Aan013617 101 ESSgggsggGEGASEQDKIMSEVYLGKQICNVVACEGMDRVERHETLTQWKTRLDSAGFEAVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWHT 200 9885666544445699************************************************************************************ PP GRAS 365 rpLvsvSaWr 374 rpL+++SaW+ Aan013617 201 RPLITTSAWK 210 *********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 31.089 | 1 | 189 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-70 | 5 | 210 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
XVSLINVEFE YRGFVANSLA DLEPGMFDLR DDEVVAVNSV FELHRLLGRP MAVEKVLDVV 60 KGLKPVILTV VEQEANHNGL VFLDRFTESL HYYSTLFDSL ESSGGGSGGG EGASEQDKIM 120 SEVYLGKQIC NVVACEGMDR VERHETLTQW KTRLDSAGFE AVHLGSNAFK QASMLLALFA 180 GGDGYRVEEN NGCLMLGWHT RPLITTSAWK LK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-28 | 15 | 209 | 195 | 378 | Protein SCARECROW |
5b3h_A | 7e-28 | 5 | 209 | 185 | 377 | Protein SCARECROW |
5b3h_D | 7e-28 | 5 | 209 | 185 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023742265.1 | 1e-125 | DELLA protein GAI1-like | ||||
Swissprot | Q8S4W7 | 1e-110 | GAI1_VITVI; DELLA protein GAI1 | ||||
TrEMBL | A0A0K0M6F5 | 1e-147 | A0A0K0M6F5_ARTAN; DELLA2 protein | ||||
TrEMBL | A0A1B0T6S0 | 1e-149 | A0A1B0T6S0_CHRMO; GRAS protein (Fragment) | ||||
STRING | POPTR_0008s13090.1 | 1e-115 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 1e-107 | GRAS family protein |