PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan013594
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C2H2
Protein Properties Length: 329aa    MW: 36923.4 Da    PI: 10.1369
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41969304PU_unrefUnigeneView CDS
gnl|UG|Aan#S54993382PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-183160991PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-0583103323
                ETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                C++C+k F r  nL+ H r H
  Aan013594  83 CEICNKGFQRDQNLQLHRRGH 103
                *******************88 PP
2zf-C2H212.60.00042158180123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k++  +s+ k H + +
  Aan013594 158 WKCDKCSKRYAVQSDWKAHSKIC 180
                58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-580103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.57E-880103No hitNo description
SMARTSM003550.1181103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.82481103IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM0035593123153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.1E-5146179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.57E-8153178No hitNo description
SMARTSM00355140158178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSNLTSASNE ASLSSSGNRN EIGTMYPPPQ MHQSFGSVPI TSSTNNQTQS NKKKRNLPGN  60
PDPEAEVVAL SPKSLMATNR FLCEICNKGF QRDQNLQLHR RGHNLPWKLK QKSKLEVVRK  120
KVYVCPEPSC VHHEPSRALG DLTGIKKHFS RKHGEKKWKC DKCSKRYAVQ SDWKAHSKIC  180
GTREYRCDCG TLFSRRDSFI THRAFCDALA EETARSSSSS LNHLPLHLPI NFPLKSEPQH  240
LFQNPQLSFN IGSNTPHPNH QLPSWLDHNQ HHQQQQNSNP NTLHLPSPSS HMSATALLQK  300
AAQMGVTSSN PAISMPHQHQ QSILLNGSX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35154223372Zinc finger protein JACKDAW
5b3h_F1e-35154223372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109120KQKSKLEVVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024987971.10.0protein indeterminate-domain 12-like
SwissprotQ8H1F51e-118IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A2U1NDX70.0A0A2U1NDX7_ARTAN; Zinc finger, C2H2-like protein
STRINGEOY299171e-133(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-112indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]