PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan013531

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

DBB

Protein Properties

Length: 307aa MW: 33348.2 Da PI: 5.1573

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-630160996	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.9	3.6e-07	26	67	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37 +r+C+++ + + +++C+ + +lC C +H H Aan013531 26 ARVCDTCRSAPCTIYCRPDAAYLCTACDARIHAAnklqssqH 67 589*****************************6555555666 PP
2	zf-B_box	29.4	1.7e-09	70	114	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ +e+ ++ + C+ + lC +C +H H +vp Aan013531 70 VWVCEACEQAPAAFICKADAASLCVTCDADIHAAnplarrHHRVP 114 689*****************************6678888877766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.869	24	72	IPR000315	B-box-type zinc finger
SMART	SM00336	6.5E-6	24	72	IPR000315	B-box-type zinc finger
CDD	cd00021	1.44E-6	27	72	No hit	No description
PROSITE profile	PS50119	10.893	68	115	IPR000315	B-box-type zinc finger
Pfam	PF00643	5.0E-7	69	114	IPR000315	B-box-type zinc finger
CDD	cd00021	6.14E-8	71	115	No hit	No description
SMART	SM00336	1.3E-8	73	115	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
XTSNPKHQIM LDHSSALCLK TSTTFARVCD TCRSAPCTIY CRPDAAYLCT ACDARIHAAN 60 KLQSSQHERV WVCEACEQAP AAFICKADAA SLCVTCDADI HAANPLARRH HRVPVMPIPG 120 AMYGPRANDP RSVIGLGVDS QSGFLSGTEQ GDDTIDDEDE SEAASWLLFD GPAPKNSQNQ 180 NAKDNGFLFN GEGGEDEYLE FMEFGGDDQQ QCYNKGSEKM YSSANGEADS VVPVQKNHHH 240 QIHQHEVHNQ KFQLGMEYES SNGGASGGYG YPVLTHSVSM SSMEVGVVPD STRSEQHSLS 300 NPRPAKX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023728982.1	1e-161	zinc finger protein CONSTANS-LIKE 2
TrEMBL	A0A2U1QP10	0.0	A0A2U1QP10_ARTAN; Constans-like 1
STRING	Solyc02g089540.2.1	3e-83	(Solanum lycopersicum)
STRING	PGSC0003DMT400026065	6e-83	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	2e-56	CONSTANS-like 2