PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan012345 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | HSF | ||||||||
Protein Properties | Length: 96aa MW: 11421.8 Da PI: 5.0631 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 97.1 | 1.7e-30 | 14 | 91 | 2 | 88 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 F+ k+ye+++d+ +++++sws+n++sfvv+++ ef+ ++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+ weF+++ + k Aan012345 14 FIVKTYEMVDDPLTDHIVSWSHNERSFVVWNPPEFSGELLPRFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANEDLLK 91 9***************************************************************9998.........8888887644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.0E-35 | 4 | 92 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.94E-30 | 9 | 89 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.0E-42 | 10 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.7E-20 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.0E-26 | 14 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.7E-20 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.7E-20 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MNDAQSNVNN LPPFIVKTYE MVDDPLTDHI VSWSHNERSF VVWNPPEFSG ELLPRFFKHN 60 NFSSFIRQLN TYGFRKIDPE QWEFANEDLL KASRIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-20 | 4 | 77 | 19 | 92 | Heat shock factor protein 1 |
5d5v_B | 1e-20 | 4 | 77 | 19 | 92 | Heat shock factor protein 1 |
5d5v_D | 1e-20 | 4 | 77 | 19 | 92 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024992766.1 | 1e-54 | heat stress transcription factor A-4c-like | ||||
Swissprot | O81821 | 7e-39 | HFA1B_ARATH; Heat stress transcription factor A-1b | ||||
Swissprot | Q9SCW5 | 5e-39 | HFA1E_ARATH; Heat stress transcription factor A-1e | ||||
TrEMBL | A0A2U1QJY2 | 7e-58 | A0A2U1QJY2_ARTAN; Uncharacterized protein | ||||
STRING | Gorai.011G036400.1 | 7e-46 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02990.1 | 2e-41 | heat shock transcription factor A1E |
Publications ? help Back to Top | |||
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