PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan010871

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

MYB_related

Protein Properties

Length: 146aa MW: 17185.9 Da PI: 7.7099

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55163098	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.4	7.6e-09	52	94	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eE ++l d+++++ + + Ia ++++ Rt +++k+r+++ Aan010871 52 TWTKEETDQLFDLCERFDLR-FVVIADRFPTPRTVEELKNRYYS 94 7*****************.*****88********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16282	2.2E-32	25	99	IPR032563	DAMP1, SANT/Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.1E-7	46	97	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.06E-8	48	101	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-9	49	98	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
XARKDNLELY HWVRVVNGTP PTGDYSFAKY NKSVDVIKYT DEEYEKHLTD STWTKEETDQ 60 LFDLCERFDL RFVVIADRFP TPRTVEELKN RYYSVSRTIL IARAPSPADV SGHPLVKEPY 120 NISHEIDRKR ALSMVLSQTK HQERKX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3hm5_A	2e-22	24	109	4	93	DNA methyltransferase 1-associated protein 1
4iej_A	2e-22	24	109	4	93	DNA methyltransferase 1-associated protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305\|Ref.5}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024966509.1	4e-94	SWR1-complex protein 4 isoform X1
Refseq	XP_024966511.1	3e-94	SWR1-complex protein 4 isoform X3
Swissprot	Q8VZL6	7e-80	SWC4_ARATH; SWR1-complex protein 4
TrEMBL	A0A2U1PEC9	1e-100	A0A2U1PEC9_ARTAN; Myb-like transcription factor family protein
STRING	XP_010241543.1	2e-91	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	3e-82	MYB_related family protein

Publications ? help Back to Top
Gómez-Zambrano Á, et al. Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes. Mol Plant, 2018. 11(6): p. 815-832 [PMID:29604400]