PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan010759 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | MYB | ||||||||
Protein Properties | Length: 149aa MW: 17270.8 Da PI: 9.6384 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.1 | 2e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++lv+ ++++G +W++ +r g++R++k+c++rw +yl Aan010759 14 KGPWTDEEDQKLVKHIEKHGHSSWRALPRLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.8 | 5.2e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eE+e +++++ +lG++ W++Ia +++ gRt++++k++w++ Aan010759 67 RGKFSHEEEETILHLHSMLGNK-WSAIATHLP-GRTDNEIKNYWNTN 111 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.667 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.36E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.99E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.933 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-17 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.79E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MGRPPCCDEP SLKKGPWTDE EDQKLVKHIE KHGHSSWRAL PRLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SHEEEETILH LHSMLGNKWS AIATHLPGRT DNEIKNYWNT NLKKKLIHMG 120 IDPMAHRPCM DIFSSIPHLM ALANLKELX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-31 | 10 | 116 | 3 | 108 | B-MYB |
1h8a_C | 2e-31 | 10 | 116 | 23 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010087606.1 | 4e-92 | transcription factor MYB93 | ||||
Swissprot | Q9S9Z2 | 8e-86 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A2U1PQF2 | 1e-104 | A0A2U1PQF2_ARTAN; Myb domain protein 92 | ||||
STRING | XP_010087606.1 | 1e-91 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 3e-88 | myb domain protein 93 |
Publications ? help Back to Top | |||
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