PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan010287 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | MYB | ||||||||
Protein Properties | Length: 163aa MW: 18566.3 Da PI: 9.8106 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30 | 1.2e-09 | 9 | 39 | 17 | 48 |
HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++ G++ W++++++ g+ R++k+c++rw +yl Aan010287 9 RKKGPR-WSSVPKHAGLQRCGKSCRLRWINYL 39 677877.***********************97 PP | |||||||
2 | Myb_DNA-binding | 49.1 | 1.3e-15 | 45 | 89 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg ++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k++w++ Aan010287 45 RGLFSQQEEDLILHLHQVLGNR-WAQIAAQLP-GRTDNEIKNYWNSC 89 7889******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 7.931 | 1 | 39 | IPR017930 | Myb domain |
SMART | SM00717 | 23 | 5 | 41 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00282 | 5 | 39 | No hit | No description |
Pfam | PF00249 | 5.9E-8 | 8 | 39 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-15 | 9 | 46 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.55E-22 | 25 | 100 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.363 | 40 | 94 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-14 | 44 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 45 | 89 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-26 | 47 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.36E-10 | 48 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
LACTFVCLRK KGPRWSSVPK HAGLQRCGKS CRLRWINYLR PDLKRGLFSQ QEEDLILHLH 60 QVLGNRWAQI AAQLPGRTDN EIKNYWNSCL KKKLIKQGID PNTHKPVSDN NDVKDKKMEF 120 FSSCSSSMPM TAELDQSYHI NNGGLILSSS SSMENNPVRV DPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-24 | 8 | 94 | 19 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 4e-24 | 8 | 94 | 42 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 3e-24 | 8 | 94 | 19 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-24 | 8 | 94 | 19 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, flowers and seeds. Weakly expressed in leaves and roots. {ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023739361.1 | 5e-83 | transcription repressor MYB6-like | ||||
Swissprot | Q8LPH6 | 1e-51 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A2U1NGA0 | 1e-100 | A0A2U1NGA0_ARTAN; Homeodomain-like protein | ||||
STRING | XP_008348427.1 | 9e-61 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G57560.1 | 3e-54 | myb domain protein 50 |