PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan008863 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | GATA | ||||||||||||
Protein Properties | Length: 204aa MW: 22476.3 Da PI: 10.6367 | ||||||||||||
Description | GATA family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.9 | 6.6e-19 | 125 | 159 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l Aan008863 125 CSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRL 159 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.0E-15 | 119 | 173 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.648 | 119 | 155 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.62E-14 | 120 | 181 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.2E-15 | 123 | 157 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.41E-13 | 124 | 181 | No hit | No description |
Pfam | PF00320 | 9.3E-17 | 125 | 159 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 125 | 150 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
XDDSFSCGYS LTCPAGKFPE KKQEPKPEPE TGLVVKPSFT TPVQTKARSK RFRTGGRVWS 60 LGSNALTEST TSSSSSSSCT SNPWLFLHDS LSNQTAESFL GRKPVKRQKK KTLTGPVDPV 120 QPRRCSHCGV QKTPQWRTGP LGAKTLCNAC GVRFKSGRLL PEYRPACSPT FSSEVHSNNH 180 RKVLEMRMKK EAVQPGLTQP VQSF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 110 | RKPVKRQKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024975662.1 | 3e-95 | GATA transcription factor 5-like | ||||
Refseq | XP_024975663.1 | 3e-95 | GATA transcription factor 5-like | ||||
Swissprot | Q9FH57 | 7e-47 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A2U1M4B6 | 1e-143 | A0A2U1M4B6_ARTAN; GATA transcription factor | ||||
STRING | XP_009346302.1 | 2e-63 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 1e-47 | GATA transcription factor 5 |