PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan008483 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | MYB_related | ||||||||
Protein Properties | Length: 216aa MW: 24984.5 Da PI: 10.6299 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28 | 5e-09 | 45 | 87 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a ++ G++ +++I ++++ + q++++++ + Aan008483 45 AWTRQEEESFFSALHKVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 87 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.27E-10 | 40 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.561 | 41 | 92 | IPR017884 | SANT domain |
SMART | SM00717 | 1.8E-6 | 42 | 90 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-6 | 44 | 90 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-7 | 45 | 87 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.32E-5 | 45 | 88 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MEPHVSGHEV SDIPESVFIK DVITSETHHV ASKEPASKKT RQWAAWTRQE EESFFSALHK 60 VGKNFEKITS RVQSKNKDQV RHYYYRLVRR MNKLLGPELA LDARNCKETN AAMLRWWSLL 120 EKQSCKASKL HLKPRRFKIF MENLEHQLLK DRKKNIRKRL IQGENSSLTP SNAVSIQGRA 180 CTQDARIDLV DSQTTQNLNS GKGSSLRRNA NTCLDR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers, roots and leaves. {ECO:0000269|PubMed:15047893}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024979013.1 | 1e-123 | TSL-kinase interacting protein 1-like isoform X1 | ||||
Refseq | XP_024979019.1 | 1e-124 | TSL-kinase interacting protein 1-like isoform X2 | ||||
Swissprot | Q8LJT8 | 6e-77 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | A0A2U1KZN1 | 1e-148 | A0A2U1KZN1_ARTAN; TSL-kinase interacting protein 1 | ||||
STRING | Gorai.009G414900.1 | 4e-90 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.1 | 3e-79 | TSL-kinase interacting protein 1 |