PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan006876

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

LBD

Protein Properties

Length: 266aa MW: 29007.4 Da PI: 6.6999

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-67323	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.8	2.2e-30	6	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a pe+ r+ +++sl+yeA+ r+ +P+yG+vg+++++++q++q ++e++ Aan006876 6 SCNGCRVLRKGCSDDCNIRPCLqwiksPESQANATVFLAKFYGRAGLMNLVSAGPEHLRPGIFRSLLYEACGRIVNPIYGSVGLLWSGRWQMCQDAVEAV 105 6************************************************************************************************998 PP DUF260 96 llke 99 l ++ Aan006876 106 LKGS 109 8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.492	5	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-24	6	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
XTMRMSCNGC RVLRKGCSDD CNIRPCLQWI KSPESQANAT VFLAKFYGRA GLMNLVSAGP 60 EHLRPGIFRS LLYEACGRIV NPIYGSVGLL WSGRWQMCQD AVEAVLKGSP IVQVASDAEE 120 TTHAPPLKAY DIRHVSKDEQ PSDGSKSNEL LHKIRSRCRF KKTSSGSKEN NKKMNRVGSD 180 EESGRASSDH ESTLSHQSET AAHVVEGDSH VTVAGEGPVK SEVELELTLG FEPVQRSWSC 240 EPAGKVAGGF DDSGEGVCRM ELGLDY

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021998462.1	1e-126	LOB domain-containing protein 41-like
Swissprot	Q9M886	8e-96	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2U1NKN8	0.0	A0A2U1NKN8_ARTAN; LOB domain-containing protein
STRING	Aquca_026_00293.1	1e-106	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	3e-98	LOB domain-containing protein 41