PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan006876 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | LBD | ||||||||
Protein Properties | Length: 266aa MW: 29007.4 Da PI: 6.6999 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.8 | 2.2e-30 | 6 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a pe+ r+ +++sl+yeA+ r+ +P+yG+vg+++++++q++q ++e++ Aan006876 6 SCNGCRVLRKGCSDDCNIRPCLqwiksPESQANATVFLAKFYGRAGLMNLVSAGPEHLRPGIFRSLLYEACGRIVNPIYGSVGLLWSGRWQMCQDAVEAV 105 6************************************************************************************************998 PP DUF260 96 llke 99 l ++ Aan006876 106 LKGS 109 8766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.492 | 5 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.1E-24 | 6 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
XTMRMSCNGC RVLRKGCSDD CNIRPCLQWI KSPESQANAT VFLAKFYGRA GLMNLVSAGP 60 EHLRPGIFRS LLYEACGRIV NPIYGSVGLL WSGRWQMCQD AVEAVLKGSP IVQVASDAEE 120 TTHAPPLKAY DIRHVSKDEQ PSDGSKSNEL LHKIRSRCRF KKTSSGSKEN NKKMNRVGSD 180 EESGRASSDH ESTLSHQSET AAHVVEGDSH VTVAGEGPVK SEVELELTLG FEPVQRSWSC 240 EPAGKVAGGF DDSGEGVCRM ELGLDY |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021998462.1 | 1e-126 | LOB domain-containing protein 41-like | ||||
Swissprot | Q9M886 | 8e-96 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A2U1NKN8 | 0.0 | A0A2U1NKN8_ARTAN; LOB domain-containing protein | ||||
STRING | Aquca_026_00293.1 | 1e-106 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 3e-98 | LOB domain-containing protein 41 |