PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan006857

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

FAR1

Protein Properties

Length: 266aa MW: 30626.7 Da PI: 5.4876

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41949975	PU_ref	Unigene	View CDS
PUT-183a-Artemisia_annua-61848	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	91.4	1.2e-28	85	188	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 +fY+eYA+++GFs+ +++s++sk+++e+++++f Cs++g+++e++k+ e+++ +r+ ++t+Cka+++vk+++dgkw ++++e++HnH Aan006857 85 SFYQEYARSMGFSTAIQNSRRSKTSREFIDAKFACSRYGTKREQDKSfnrprsrqgsnqdPENASGRRSCSKTDCKASMHVKRRSDGKWIIHRFEKDHNH 184 5************************************************999998877666777999***************************** PP FAR1 88 elap 91 +l p Aan006857 185 DLLP 188 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-27	85	188	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MDINLRLPSG EHEKEDKDEA KEMTIFMDDD KMNNEDDLGR EIEKLPSDSD GAMISTSLDL 60 VDFKEDINLE PISGMEFESH GEAYSFYQEY ARSMGFSTAI QNSRRSKTSR EFIDAKFACS 120 RYGTKREQDK SFNRPRSRQG SNQDPENASG RRSCSKTDCK ASMHVKRRSD GKWIIHRFEK 180 DHNHDLLPAQ AVSEQTRKMY AAMARQFAEY KNVVGLKIEA SNPFDKSRNM AFETGEANTL 240 CRFFAQMQSI NSNFFYAIDV GEDQRX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:17012604, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:18715961, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024990995.1	1e-151	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_024990996.1	1e-151	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_024990998.1	1e-151	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_024990999.1	1e-151	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Swissprot	Q9LIE5	1e-113	FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A2U1KWS8	0.0	A0A2U1KWS8_ARTAN; Far-red elongated hypocotyls 3
TrEMBL	A0A2U1KWU6	0.0	A0A2U1KWU6_ARTAN; Far-red elongated hypocotyls 3
STRING	VIT_03s0017g01780.t01	1e-131	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-113	far-red elongated hypocotyls 3

Publications ? help Back to Top
Chang N,Gao Y,Zhao L,Liu X,Gao H Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel. Sci Rep, 2015. 5: p. 9612 [PMID:25872642] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Li D, et al. FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80 [PMID:27469166] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]