PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan006531

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

G2-like

Protein Properties

Length: 280aa MW: 30639.8 Da PI: 6.6226

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-9399	PU_ref	plantGDB	View CDS
PUT-183a-Artemisia_annua-9400	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.2	2.2e-34	42	96	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl Aan006531 42 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 96 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-33	39	97	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.095	39	99	IPR017930	Myb domain
SuperFamily	SSF46689	1.56E-17	41	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-24	42	97	IPR006447	Myb domain, plants
Pfam	PF00249	8.1E-9	44	95	IPR001005	SANT/Myb domain
Pfam	PF14379	3.9E-27	139	186	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MYSGMHSISL DGSNLGHGEY PGQIDGSGFV GDPCLVLTTD PKPRLRWTAE LHERFVDAVT 60 QLGGPDKATP KTIMRTMGVK GLTLYHLKSH LQKYRLGKQS CKEFTENSKD ASCIAESQDT 120 GSSTTSSTRM MPQDSNDGFQ VTEALRVQME VQRRLHEQLE VQRRLQLRIE AQGKYLQSIL 180 EKACKALNDQ AVATAGLDAA REELSELAIK VANDCPPSVI PIPSLPDVTA YLENGIAPSI 240 DSCLTSNSNP VSPMGMKKRH RAMFSNGGES LPQAEWMMSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-20	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-20	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-20	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-20	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-20	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-20	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-20	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-20	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024985451.1	0.0	protein PHR1-LIKE 3
Swissprot	Q94A57	1e-126	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2J6JK77	1e-176	A0A2J6JK77_LACSA; Uncharacterized protein
STRING	XP_004299108.1	1e-141	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-123	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]