PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan006510
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB
Protein Properties Length: 281aa    MW: 31390 Da    PI: 5.9224
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55089804PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-675160993PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd ll ++++ +G g+W+  + + g+ R++k+c++rw +yl
        Aan006510 14 RGAWSSEEDRLLTNYIETHGEGQWRNLPTKAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding56.56.2e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eEd+l+++++  +G++ W+ Ia ++  gRt++++k++w+++l
        Aan006510  67 RGSFTPEEDDLIIQLHSVHGNK-WSFIATELK-GRTDNEIKNHWNSHL 112
                      89********************.********9.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.555961IPR017930Myb domain
SuperFamilySSF466898.8E-3011108IPR009057Homeodomain-like
SMARTSM007174.9E-121363IPR001005SANT/Myb domain
PfamPF002499.8E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-231568IPR009057Homeodomain-like
CDDcd001671.40E-91661No hitNo description
PROSITE profilePS5129429.49462116IPR017930Myb domain
SMARTSM007175.2E-1766114IPR001005SANT/Myb domain
PfamPF002491.1E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2769115IPR009057Homeodomain-like
CDDcd001672.65E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGAWSSE EDRLLTNYIE THGEGQWRNL PTKAGLLRCG KSCRLRWMNY  60
LRPGIKRGSF TPEEDDLIIQ LHSVHGNKWS FIATELKGRT DNEIKNHWNS HLKRKAANSS  120
GDQENPPDES ETNKKPKKKR RNTNSKSTKV KPVNVPVPEN IVPQEIVPQP ASSYTSLSSS  180
QSASFTLRKT DSFDSVMMSG SSSSSSVDQG VEADLLATDF SWPSWAPMFE IDQGVGSMNG  240
PDDHDLPFEI CDLLMSNVDE SEMLDKLYSE YLNLIEDGPQ A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-26121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136140KKKRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed at low level. Highly expressed in siliques. Weakly expressed in seedlings, young and mature leaves, cauline leaves, stems, flower buds and roots. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022022105.11e-116transcription factor MYB8-like
SwissprotQ9SZP11e-56MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A2U1MGE80.0A0A2U1MGE8_ARTAN; Homeodomain-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-57myb domain protein 111
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]