PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Aan006228 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
|
||||||||||||
Family | MYB_related | ||||||||||||
Protein Properties | Length: 300aa MW: 34239.6 Da PI: 5.1051 | ||||||||||||
Description | MYB_related family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.9 | 1.3e-09 | 10 | 52 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ +Ed+ + +++ G++ W+ a+ ++ gRt++++k+++++ Aan006228 10 GEFSDDEDKVICALFASIGSR-WSIMAAQLP-GRTDNDIKNYLNT 52 789******************.*********.**********997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.93E-11 | 2 | 58 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 2 | 58 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.806 | 4 | 58 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-7 | 8 | 56 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-7 | 10 | 52 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.77E-4 | 11 | 52 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 300 aa Download sequence Send to blast |
XYLRPDIKHG EFSDDEDKVI CALFASIGSR WSIMAAQLPG RTDNDIKNYL NTKLKKKLLA 60 MLPPLFKKGP SFFPSLPLQS TPLYTPNHFL TNNTSPFYGY NTTNFMTMNM NMNNQDHMNI 120 TQFQPPQSQD PNSLVGLITN NIDNNDNSFY LGFQDTHPME YNYPTSDVKE AMLMFGNYNK 180 DHHEVSTTGS SSDGGSCLSQ LSFGNYDNKQ HQVKQEDQFG LQGTFGDQNQ SLIINNMSYT 240 DQKPKGYSVK NNFESLLHSD LEEVKQLIGN TNSTNSSYLL NDDDEYKTTH DDHKEICYHY |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021982743.1 | 1e-119 | transcription factor RAX2-like | ||||
TrEMBL | A0A251TZE0 | 1e-118 | A0A251TZE0_HELAN; Putative homeodomain-like protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49690.1 | 5e-19 | myb domain protein 84 |