PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan005661
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C2H2
Protein Properties Length: 349aa    MW: 39264.1 Da    PI: 8.5863
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55214508PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-76999PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.52.9e-07194216123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C+ Cgk F+r  nL+ H+r H
  Aan005661 194 HYCQVCGKGFKRDANLRMHMRAH 216
                68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.53E-6192219No hitNo description
Gene3DG3DSA:3.30.160.607.1E-7194224IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653194221IPR007087Zinc finger, C2H2
SMARTSM003550.0034194216IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280196216IPR007087Zinc finger, C2H2
SMARTSM0035589283305IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAADQPNYCF SNTYEDVLAS SIQSSTNDNT MFNLNILKDK AEQVHSIAAM YFSQTQTQSI  60
VSSSTSINME NIASLLQEII VIASNVMFTY QNIGPQANHS NPSNNNHDGT LEFDHMANSN  120
NLFEWSNGGG IENSFGSVSC NTRNEYGGLD KRKQVQDVKD RHKDIGSRSH ERLSPTNYDI  180
IEMDAADLLA KYTHYCQVCG KGFKRDANLR MHMRAHGDEY KSTAALANPV SLDGNTSTKL  240
ARKYSCPQEG CRWNRKHAKF QPLKSMISCL KNHYKRSHCP KMYACKRCHQ KHFSVLSDLR  300
THEKHCGDVK WRCSCGTTFS RKDKLMGHVG LFIGHTPVVV DTGSLNKSQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022000433.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
SwissprotQ0WT241e-103STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A2U1P3990.0A0A2U1P399_ARTAN; C2H2 and C2HC zinc fingers superfamily protein
STRINGEOY336791e-115(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-102C2H2 family protein