PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan005276

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

C2H2

Protein Properties

Length: 405aa MW: 44114.1 Da PI: 9.1502

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41932355	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-53160992	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.9	2e-06	172	194	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cgk F ++nL+ H + H Aan005276 172 TCHKCGKQFGKWENLEAHHLSeH 194 7*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.037	171	199	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	173	194	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.36E-22	196	404	No hit	No description
Gene3D	G3DSA:3.90.228.10	4.3E-9	216	378	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
XKKSLHCKSD PREVHEPKSK PHLGAILTRK PARSGCSRSI ANLKDVINGG SKRHEKPVDC 60 SPRSIGSNEF VNPITHEVIL SDSRCELKIT GFNGGFSDIS NGGNGDVTLH SVKNHQQTST 120 TRRTLSLNSA KALDRNGIAT GGGVTGKNGT TQKPKVTLET ESYGSSVGGA VTCHKCGKQF 180 GKWENLEAHH LSEHAVTELM EGDSSRKIVE IICRSSLVKA ENNSGRIEKV LKVHNMQKTL 240 ARFEEYRELV KTNASKLPKK HSRCLADGNE LLRFYGTTIA CSLGINGETS LCISDKCCVC 300 RIIRHGFSTN KELKGGVGVF TTSTSAKAFE SIEVFDDSLD TRKALMVCRV IAGRVHRPLE 360 NIQEITEQTG FDSLAGKVGL HSNIEDLYLL SPKALLPCFV VICKL

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

XKKSLHCKSD PREVHEPKSK PHLGAILTRK PARSGCSRSI ANLKDVINGG SKRHEKPVDC  60
SPRSIGSNEF VNPITHEVIL SDSRCELKIT GFNGGFSDIS NGGNGDVTLH SVKNHQQTST  120
TRRTLSLNSA KALDRNGIAT GGGVTGKNGT TQKPKVTLET ESYGSSVGGA VTCHKCGKQF  180
GKWENLEAHH LSEHAVTELM EGDSSRKIVE IICRSSLVKA ENNSGRIEKV LKVHNMQKTL  240
ARFEEYRELV KTNASKLPKK HSRCLADGNE LLRFYGTTIA CSLGINGETS LCISDKCCVC  300
RIIRHGFSTN KELKGGVGVF TTSTSAKAFE SIEVFDDSLD TRKALMVCRV IAGRVHRPLE  360
NIQEITEQTG FDSLAGKVGL HSNIEDLYLL SPKALLPCFV VICKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023764228.1	0.0	uncharacterized protein LOC111912727
TrEMBL	A0A2U1PE02	0.0	A0A2U1PE02_ARTAN; Zinc finger, C2H2
STRING	XP_010267823.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-150	C2H2 family protein