PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan005177
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB
Protein Properties Length: 434aa    MW: 48716.8 Da    PI: 9.7743
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55113895PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-76657PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.2e-151867148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     r+rW +eEd ll  +v+q+G++ W++I+++m   + R +k+c +rw +yl
        Aan005177 18 RQRWQPEEDALLRAYVHQYGPKEWNLISHRMSkpLDRDPKSCLERWKNYL 67
                     89**********************************************97 PP
2Myb_DNA-binding32.91.5e-1073117147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+ T++E+ l + + +++G++ Wk+Ia++++ gRt+k +  +w  +
        Aan005177  73 KGSLTPQEQSLVISLQAKYGNK-WKKIASEVP-GRTAKRLGKWWEVF 117
                      6788******************.*********.*****999999766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.2141267IPR017930Myb domain
SMARTSM007172.9E-131769IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-2218112IPR009057Homeodomain-like
CDDcd001671.80E-92067No hitNo description
Gene3DG3DSA:1.10.10.602.0E-202074IPR009057Homeodomain-like
PfamPF139211.6E-132183No hitNo description
PROSITE profilePS5129421.10168122IPR017930Myb domain
SMARTSM007171.9E-972120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-1575116IPR009057Homeodomain-like
CDDcd001672.92E-677118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
XQAQTQPHNY VNPNMKERQR WQPEEDALLR AYVHQYGPKE WNLISHRMSK PLDRDPKSCL  60
ERWKNYLKPG IKKGSLTPQE QSLVISLQAK YGNKWKKIAS EVPGRTAKRL GKWWEVFKEK  120
QAKQQLQNSK KNNIGSSGSD ISTLQGGNIS TSVGAVSGEP EKAVQGTYDH ILETFAEKYV  180
QPYLNPASVV SVPVSLPVPV PVMPNLNSPI LSLGSGAGAG SISAPVAPDP GSMVAATLPP  240
WMSNSSASSS TTKSTTPSPS VSLTLSPSEP VVVDPVQVQV QSDHPVHSRF FPVQQVGTLV  300
QYCKEVEEAK QNWVQHKKEA TWRLNRLEQQ LEAEKNRKRR EKTEEIEAKI RSLREEETAA  360
LGRMEHEYRE QLTALQRDAE GKEMKLMETW SNKQMKLSNV VEQINGGLIQ HQHMISGTNH  420
NHHPHHHQHH HGLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-1421106789MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-13210612112MYB TRANSFORMING PROTEIN
1mse_C8e-1421106789C-Myb DNA-Binding Domain
1msf_C8e-1421106789C-Myb DNA-Binding Domain
3zqc_A1e-1325114995MYB3
3zqc_D1e-1325114995MYB3
3zqc_G1e-1325114995MYB3
3zqc_J1e-1325114995MYB3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336341RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024978003.10.0protein rough sheath 2 homolog
TrEMBLA0A059PY180.0A0A059PY18_ARTAN; MYB-related transcription factor
STRINGXP_009630091.11e-164(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.13e-60MYB family protein