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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan004767 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | MYB_related | ||||||||||||
Protein Properties | Length: 130aa MW: 14899.3 Da PI: 4.575 | ||||||||||||
Description | MYB_related family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.2 | 1.9e-08 | 31 | 75 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT+ E +l+ +a +++ ++ +W ++a++++ g+t ++ + Aan004767 31 VWTPYENKLFENALAKFDKDtpdRWQRVAEMVP-GKTVTDVMRQYK 75 6********************************.*****9988875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.061 | 27 | 80 | IPR017884 | SANT domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-4 | 27 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-8 | 28 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-7 | 31 | 76 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.2E-12 | 31 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-6 | 32 | 77 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MKWESVMLSP SSYISNSSSW MMEDSIKSTT VWTPYENKLF ENALAKFDKD TPDRWQRVAE 60 MVPGKTVTDV MRQYKELEDD VSNIEAGFYP KYGYNCSTTS NFTLEWGNGI GNDGFYSPRF 120 CAGEKRSSSX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-13 | 32 | 97 | 11 | 76 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Aan.19489 | 0.0 | trichome |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024981299.1 | 2e-55 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 2e-40 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2U1N5E0 | 3e-90 | A0A2U1N5E0_ARTAN; Transcription factor DIVARICATA | ||||
STRING | XP_006488482.1 | 2e-44 | (Citrus sinensis) | ||||
STRING | XP_006425017.1 | 2e-44 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-31 | MYB family protein |
Publications ? help Back to Top | |||
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