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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan004560 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | C2H2 | ||||||||||||
Protein Properties | Length: 164aa MW: 18542.4 Da PI: 9.3793 | ||||||||||||
Description | C2H2 family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 74 | 95 | 1 | 22 |
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 ++C++C+ +F + +L++H t Aan004560 74 FVCKICHITFGTLPHLNQHSET 95 89*****************766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 0.029 | 71 | 105 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 1.6E-5 | 72 | 110 | No hit | No description |
SMART | SM00355 | 0.19 | 74 | 98 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 76 | 98 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00451 | 0.0088 | 113 | 147 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 1.36E-6 | 114 | 145 | No hit | No description |
SMART | SM00355 | 1.5 | 116 | 140 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 1.4E-5 | 116 | 140 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 118 | 140 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MDEDMMTLHN IMPVELAIRR EMEYRSQMEV LKNRRLVNLN PLLPSQVHPT SQHALKRKEP 60 STSGTALGRR STGFVCKICH ITFGTLPHLN QHSETSRHKG NLLQLKKQGK NVSCPFACQL 120 CDISCSSGLV MADHLRGTKH STMLQDVENA KRARAEEVYA ANMY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Aan.19455 | 0.0 | trichome |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024994622.1 | 1e-83 | uncharacterized protein LOC112527980 | ||||
Refseq | XP_024994623.1 | 1e-83 | uncharacterized protein LOC112527980 | ||||
TrEMBL | A0A2U1PNZ7 | 1e-120 | A0A2U1PNZ7_ARTAN; Zinc finger, C2H2 |