PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan004043 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | DBB | ||||||||||||
Protein Properties | Length: 212aa MW: 23247.9 Da PI: 6.3833 | ||||||||||||
Description | DBB family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.2 | 1.4e-07 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC+ C ++ H Aan004043 4 LCDVCESAAAILFCAADEAALCRACDEKVH 33 7**************************998 PP | |||||||
2 | zf-B_box | 24.9 | 4.1e-08 | 52 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++C +++ lC +C ++ H g H Aan004043 52 DVQRCDICENAPAFFYCGIDGSSLCLQCDMNVHVGgkrtH 91 5789****************************96545555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.5E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.153 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.8E-6 | 3 | 41 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.37E-7 | 3 | 45 | No hit | No description |
PROSITE profile | PS50119 | 8.574 | 51 | 96 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.1E-9 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.0E-5 | 53 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.37E-6 | 55 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MRTLCDVCES AAAILFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLADP SDVQRCDICE 60 NAPAFFYCGI DGSSLCLQCD MNVHVGGKRT HGRYLLLRQR VEFPGDRSGR DDELGLQPGD 120 PGGEVRREQN NQPKATTRDN QHHRLSAIGM LENNNDGAGR MENKLFDLNA RPQRMHGQTS 180 NNQEQGMDIS GSGNNDSASV VPVGSFKREA DK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024990848.1 | 1e-135 | B-box zinc finger protein 19-like isoform X1 | ||||
Swissprot | C0SVM5 | 1e-82 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A2U1LAI4 | 1e-155 | A0A2U1LAI4_ARTAN; Zinc finger, B-box | ||||
TrEMBL | A0A3S6E9H5 | 1e-155 | A0A3S6E9H5_CHRMO; BBX19 protein (Fragment) | ||||
STRING | cassava4.1_016111m | 1e-119 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 6e-85 | DBB family protein |