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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan003738 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | C2H2 | ||||||||
Protein Properties | Length: 238aa MW: 27498.3 Da PI: 10.0911 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.5 | 5.5e-06 | 93 | 115 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Aan003738 93 FVCEICNKGFQRDQNLQLHRRGH 115 89*******************88 PP | |||||||
2 | zf-C2H2 | 14 | 0.00014 | 170 | 192 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Aan003738 170 WKCEKCSKKYAVQSDWKAHSKTC 192 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.09E-8 | 92 | 115 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.4E-6 | 92 | 115 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 3.1E-5 | 93 | 115 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 93 | 115 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 93 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 120 | 135 | 165 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.5E-5 | 158 | 191 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.09E-8 | 165 | 190 | No hit | No description |
SMART | SM00355 | 140 | 170 | 190 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MAXPSLKIRA KDKRIEDEQE RDMMSGEMFP IPLQDHHHHH QQQQHHQLPT HEPNPSPKPI 60 SNLKKKRNLP GTPDPEAEVM ALSPKSLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK 120 LKQRNKQDPI KKKVYICPEV SCVHHDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA 180 VQSDWKAHSK TCGTREYKCD CGTLFSRKDS FITHRAFCDA LAEESVRLGT PNSLGLKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 6e-38 | 166 | 230 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 6e-38 | 166 | 230 | 3 | 67 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021973189.1 | 1e-140 | zinc finger protein JACKDAW isoform X1 | ||||
Refseq | XP_021973190.1 | 1e-140 | zinc finger protein JACKDAW isoform X2 | ||||
Swissprot | Q9SCQ6 | 1e-109 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A2U1P301 | 1e-161 | A0A2U1P301_ARTAN; Zinc finger, C2H2-like, Zinc finger, double-stranded RNA binding protein | ||||
STRING | PGSC0003DMT400027159 | 1e-121 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-100 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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