PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan003096

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

HSF

Protein Properties

Length: 287aa MW: 31978.2 Da PI: 6.7919

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55105334	PU_ref	Unigene	View CDS
PUT-183a-Artemisia_annua-47784	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.7	1e-34	10	101	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y +++d++++++isw+ +g++fvv+++ +fa+++Lp+ Fkh+nf+SFvRQLn+YgF+k+ ++ weF++++F++g+k+ll +i+ Aan003096 10 FLTKTYLLVDDPATDDIISWNGDGTTFVVWKTADFARDLLPNSFKHNNFSSFVRQLNTYGFRKTVPDK---------WEFANENFRRGQKDLLIEIR 97 9*************************************************************9999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k+ Aan003096 98 RRKT 101 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	9.5E-37	3	94	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.0E-56	6	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	8.25E-33	7	99	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.1E-18	10	33	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.0E-30	10	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-18	48	60	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-18	61	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MTHRSVPAPF LTKTYLLVDD PATDDIISWN GDGTTFVVWK TADFARDLLP NSFKHNNFSS 60 FVRQLNTYGF RKTVPDKWEF ANENFRRGQK DLLIEIRRRK TVASSQANAN GKPAGDIGPT 120 TSPSNSGDDL GSSSTSSPGS KNPGSVDTPT MXKLENLSDE NEKLKKEKQT LTSELAHMKN 180 QCDDLVAFLT QNVKVAPDQI NRIMKGDVVV GETVTGDVDS NDDDEKEECF KLFGVFLKED 240 KKKRGRDEIN NSFGVQRKEM KMNNCNNTTP GMNPFATTGQ QPKYAIX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	3e-24	6	104	17	125	Heat shock factor protein 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Aan.11108	0.0	trichome

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024977721.1	1e-143	heat shock factor protein HSF24-like
Swissprot	P22335	1e-102	HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBL	A0A2U1NV81	0.0	A0A2U1NV81_ARTAN; Heat shock factor (HSF)-type, DNA-binding
STRING	VIT_07s0031g00670.t01	1e-111	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36990.1	6e-74	heat shock factor 4

Publications ? help Back to Top
Scharf KD, et al. Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF. EMBO J., 1990. 9(13): p. 4495-501 [PMID:2148291]