PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan003014
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family BBR-BPC
Protein Properties Length: 293aa    MW: 32424.8 Da    PI: 9.9864
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41966342PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-90799PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind313.28.5e-9612931301
  GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssia.erdaki....rernlalsekkaavaerd...........maflqrdkalaernkalverdnkllal 84 
                mdddg   rn+gyyep    ke+lglqlms +   rd+k+    re+ l l ++++a++++            m++ +rd +++          +++ ++
  Aan003014   1 MDDDGL--RNWGYYEPF---KEHLGLQLMSPMGdHRDTKPyfssRENPL-LLNPNGATYHHPhtrmvseptghMNY-MRDGWIQR---------ERFHHM 84 
                999999..9*****997...9***********9789***9**9777777.8899999888888999**********.9*****99.........455566 PP

  GAGA_bind  85 llvenslasalpvgvqvlsgtksidslqqlsepqle.dsavelreeeklealpi.eeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkes 182
                ++ + s        +++ls+t s + ++ +   +++ d+ +++ ee++         + +  +  ++ kkr +++ pk++++k++kk s ++k + k+++
  Aan003014  85 QPGNPS--------YSALSNTMSSHDMHLVPALDMSkDHVMNMLEEDNAVGDDSgGGSGNGGEGGSSIKKRGSTSAPKTPRTKRPKKGSLTPKVNGKPPG 176
                663332........4444555555555554444443033333444443333333033444445556677888999************9999999999999 PP

  GAGA_bind 183 aderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnp 282
                  +r+k+ kk++d+v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtttiS+yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+++n+
  Aan003014 177 --HRAKTVKKNVDMVINGIDMDISGIPIPVCSCTGSPQQCYRWGAGGWQSACCTTTISMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLASEGYNFANA 274
                ..79************************************************************************************************ PP

  GAGA_bind 283 vDLkdhWAkHGtnkfvtir 301
                +DL+++WAkHGtnkfvtir
  Aan003014 275 IDLRTYWAKHGTNKFVTIR 293
                ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.0E-1011293IPR010409GAGA-binding transcriptional activator
SMARTSM012262.6E-1421293IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDDDGLRNWG YYEPFKEHLG LQLMSPMGDH RDTKPYFSSR ENPLLLNPNG ATYHHPHTRM  60
VSEPTGHMNY MRDGWIQRER FHHMQPGNPS YSALSNTMSS HDMHLVPALD MSKDHVMNML  120
EEDNAVGDDS GGGSGNGGEG GSSIKKRGST SAPKTPRTKR PKKGSLTPKV NGKPPGHRAK  180
TVKKNVDMVI NGIDMDISGI PIPVCSCTGS PQQCYRWGAG GWQSACCTTT ISMYPLPMST  240
KRRGARIAGR KMSQGAFKKV LEKLASEGYN FANAIDLRTY WAKHGTNKFV TIR
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021977455.11e-149protein BASIC PENTACYSTEINE2-like
SwissprotQ9SKD06e-94BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLH1ZN670.0H1ZN67_ARTAN; GAGA-binding transcriptional activator
STRINGXP_010244189.11e-115(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.33e-91basic pentacysteine 2