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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan002900 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | MYB_related | ||||||||||||
Protein Properties | Length: 302aa MW: 33037.6 Da PI: 10.2661 | ||||||||||||
Description | MYB_related family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.5 | 2.3e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT eE+ l+ +v ++G+g W+tI + R+ ++k++w++ Aan002900 5 KQKWTNEEESALKAGVVKHGSGKWRTILKDPEfshilYLRSNVDLKDKWRN 55 79***********************************88***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.958 | 1 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.1E-15 | 2 | 71 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-13 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.8E-8 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 9.09E-18 | 6 | 56 | No hit | No description |
PROSITE profile | PS51504 | 23.335 | 113 | 187 | IPR005818 | Linker histone H1/H5, domain H15 |
SMART | SM00526 | 7.4E-12 | 117 | 182 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 5.99E-17 | 117 | 192 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.0E-15 | 118 | 188 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 4.9E-9 | 124 | 180 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MGAPKQKWTN EEESALKAGV VKHGSGKWRT ILKDPEFSHI LYLRSNVDLK DKWRNMSVMA 60 NGWGSREKAR IALKRIHSGS KDDNPLALAN VDDTDDDSGD GRPLPSSSGS PQTGGSKRSM 120 IRLDNLIMEA ISNLKEPGGS NKTTIGSYIE EQYWAPPNFK RLLSMKLKFL TQTGKLVKTK 180 RRFRIASANV MVSDKKKIPS MLRLEGGRPS GSSPRFDKDD INVPTRGQID LELQKMRSMT 240 PQEAAAAAAQ AVAEAEAAIA EAEEAAREAE AAEADAEAAQ AFAEAAMKTL KGRTAQRLMI 300 RA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024979249.1 | 1e-153 | telomere repeat-binding factor 1 | ||||
Swissprot | Q8VWK4 | 7e-98 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A2U1NMX3 | 0.0 | A0A2U1NMX3_ARTAN; Uncharacterized protein | ||||
STRING | XP_009606142.1 | 1e-113 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 9e-92 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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