PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan002490

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

bZIP

Protein Properties

Length: 332aa MW: 36897.2 Da PI: 6.7493

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41959104	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-78150	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.5e-10	146	201	5	60
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l + l Aan002490 146 KRAKRIMANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLALFQRDTTGLS 201 9****************************************999877766655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.9E-16	142	206	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.737	144	207	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.5E-10	146	201	No hit	No description
Pfam	PF00170	3.2E-9	146	202	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.27E-10	146	197	No hit	No description
CDD	cd14703	3.71E-23	147	196	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
XQSPFPKITM QDPNPNPNPN PNPFPFRPSH HRRSLSESTF LPDDLDLVSD APSGGSFESE 60 DDLFSTYLNI DNNNNNIGGP PSTNINQTLV SNDTNNSNNG EGSGSMRRGH RHSNSVDSSS 120 FFGESIEAKK AMAPDKLAEL WSVDPKRAKR IMANRQSAAR SKERKARYIT ELERKVQTLQ 180 TEATTLSAQL ALFQRDTTGL SSENTELKIR LQAMELQAQL RDALNEALKQ EVERLRIATG 240 EIANCSDGYN LGMHHFQYNQ PNFFRNQKQT EPPQYHHNHQ SNMSNNHQTL AAAGQQDPLG 300 RFQGLDISNR GGSHLVKSEG VSISTSESSG TF

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269\|PubMed:27896439}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024991016.1	1e-145	bZIP transcription factor 18-like
Swissprot	O22873	2e-98	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A2U1PUU6	0.0	A0A2U1PUU6_ARTAN; Basic-leucine zipper domain-containing protein
STRING	Solyc06g049040.2.1	1e-119	(Solanum lycopersicum)
STRING	XP_004307733.1	1e-119	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-85	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]