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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Aan000254 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 271aa MW: 30507.4 Da PI: 8.6572 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Aan#S41947345 | PU_unref | Unigene | View CDS |
| gnl|UG|Aan#S41956211 | PU_unref | Unigene | View CDS |
| PUT-183a-Artemisia_annua-28288 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 299.6 | 1.2e-91 | 1 | 271 | 32 | 301 |
GAGA_bind 32 iaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla...salpvgvqvlsgtksidslqqlsepqledsavelre 128
+aerda+irernlal e+k a+aerd a lqrd+alaern + erd+++++l ++ n ++ +++p + ++ s + d+ +e++e
Aan000254 1 MAERDAAIRERNLALDERKRAFAERDLAMLQRDAALAERNSVMQERDEAIATLRFRGNFMNeniMSTPEVPENIPSCGSKRGFSD----EEMDHMFEMPE 96
78******************************************************99888555444444444443333332222....23355566666 PP
GAGA_bind 129 eeklealpieeaaeeakekkkkkkrqrakkpkekkak...kkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkW 225
++++ +p++ a + + k++k r+ ++k+k++k+ + + k+ + es+d+++ + +k +l+ln+v++Des++PvPvCsCtGa++ CY+W
Aan000254 97 DSCNKREPLKMADTYQVPPKNTKPRKVTRKAKSPKKGgrkRGDSVKMKPDFGGNDESSDDSQLEAWK-DELGLNQVNFDESAMPVPVCSCTGAPQPCYRW 195
6666666666666555555555555555555555555100444444444444555555555555555.69****************************** PP
GAGA_bind 226 GnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
G+GGWqSaCCttt+S+yPLP+ +++r +R++grKmS+gaf+klL +L++eGydls +DLkdhWAkHGtn++ t++
Aan000254 196 GSGGWQSACCTTTMSMYPLPQLANKRYSRVGGRKMSGGAFTKLLTRLSSEGYDLSSQLDLKDHWAKHGTNRYSTVK 271
**************************************************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 271 aa
Download sequence Send
to blast |
MAERDAAIRE RNLALDERKR AFAERDLAML QRDAALAERN SVMQERDEAI ATLRFRGNFM 60
NENIMSTPEV PENIPSCGSK RGFSDEEMDH MFEMPEDSCN KREPLKMADT YQVPPKNTKP 120
RKVTRKAKSP KKGGRKRGDS VKMKPDFGGN DESSDDSQLE AWKDELGLNQ VNFDESAMPV 180
PVCSCTGAPQ PCYRWGSGGW QSACCTTTMS MYPLPQLANK RYSRVGGRKM SGGAFTKLLT 240
RLSSEGYDLS SQLDLKDHWA KHGTNRYSTV K
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
