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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT5G67420.1 |
Common Name | ASL39, K8K14.16, LBD37 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
LBD |
Protein Properties |
Length: 250aa MW: 27113.5 Da PI: 7.6627 |
Description |
LOB domain-containing protein 37 |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 100.7 | 1.4e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93
+C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++a+p+++r+++++sl+yeA+ r+ +Pv+Ga+g++++++++++q+++e
AT5G67420.1 2 SCNGCRVLRKGCSENCILRPCIqwietADAQGHATVFVAKFFGRAGLMSFISAVPDSQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVE 99
6*********************9998666789****************************************************************99 PP
DUF260 94 lall 97
++l+
AT5G67420.1 100 TVLR 103
9876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 250 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR 60 PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET VLRGGSLRPI PELLTHGGGF 120 AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE 180 DQPSSELDLS LIPNFPIKQA TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG 240 ETTKLLNLFV
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB473872 | 0.0 | AB473872.1 Arabidopsis thaliana ASL39 mRNA for ASYMMETRIC LEAVES2-like 39 protein, complete cds. |
GenBank | AF447894 | 0.0 | AF447894.1 Arabidopsis thaliana LOB DOMAIN 37 (LBD37) mRNA, complete cds. |
GenBank | BT024477 | 0.0 | BT024477.1 Arabidopsis thaliana At5g67420 mRNA, complete cds. |
Publications
? help Back to Top |
- Iwakawa H, et al.
The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper. Plant Cell Physiol., 2002. 43(5): p. 467-78 [PMID:12040093] - Shuai B,Reynaga-Peña CG,Springer PS
The lateral organ boundaries gene defines a novel, plant-specific gene family. Plant Physiol., 2002. 129(2): p. 747-61 [PMID:12068116] - Scheible WR, et al.
Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. Plant Physiol., 2004. 136(1): p. 2483-99 [PMID:15375205] - Yang W, et al.
An egg apparatus-specific enhancer of Arabidopsis, identified by enhancer detection. Plant Physiol., 2005. 139(3): p. 1421-32 [PMID:16258010] - Usadel B, et al.
Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes. Plant Physiol., 2008. 146(4): p. 1834-61 [PMID:18305208] - Matsumura Y,Iwakawa H,Machida Y,Machida C
Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana, and functional and molecular comparisons between AS2 and other family members. Plant J., 2009. 58(3): p. 525-37 [PMID:19154202] - Rubin G,Tohge T,Matsuda F,Saito K,Scheible WR
Members of the LBD family of transcription factors repress anthocyanin synthesis and affect additional nitrogen responses in Arabidopsis. Plant Cell, 2009. 21(11): p. 3567-84 [PMID:19933203] - Albinsky D, et al.
Metabolomic screening applied to rice FOX Arabidopsis lines leads to the identification of a gene-changing nitrogen metabolism. Mol Plant, 2010. 3(1): p. 125-42 [PMID:20085895] - Castaings L,Marchive C,Meyer C,Krapp A
Nitrogen signalling in Arabidopsis: how to obtain insights into a complex signalling network. J. Exp. Bot., 2011. 62(4): p. 1391-7 [PMID:21118821] - Causier B,Ashworth M,Guo W,Davies B
The TOPLESS interactome: a framework for gene repression in Arabidopsis. Plant Physiol., 2012. 158(1): p. 423-38 [PMID:22065421] - Zhou LL,Shi MZ,Xie DY
Regulation of anthocyanin biosynthesis by nitrogen in TTG1-GL3/TT8-PAP1-programmed red cells of Arabidopsis thaliana. Planta, 2012. 236(3): p. 825-37 [PMID:22669605] - Jin J, et al.
An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors. Mol. Biol. Evol., 2015. 32(7): p. 1767-73 [PMID:25750178] - Menz J,Li Z,Schulze WX,Ludewig U
Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]
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