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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
AT5G66990.1 |
| Common Name | K8A10.6, RKD3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
Nin-like |
| Protein Properties |
Length: 277aa MW: 32393 Da PI: 8.9971 |
| Description |
RWP-RK domain-containing protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | RWP-RK | 84.1 | 1.3e-26 | 157 | 206 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
+++s e++++yF++pi++AAkeL++++T+LK++CR++GI+RWPhRk++sl
AT5G66990.1 157 NNMSREMMKQYFYMPITKAAKELNIGVTLLKKRCRELGIPRWPHRKLTSL 206
6899*******************************************997 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 277 aa
Download sequence Send
to blast |
MADQRPLMTW LEANNYESFL QEDIFSFLDQ SLFVDPHSSF IDPFKDFQTQ NWFSLQDSIV 60
NHISTTFAAD HTFLASLDLE AISSTFSLDI SSGWWNENNG NYNNQVEPNL DEISRTNTMG 120
DPNMEQILHE DVNTMKEKTS QKRIIMKRRY REDGVINNMS REMMKQYFYM PITKAAKELN 180
IGVTLLKKRC RELGIPRWPH RKLTSLNALI ANLKDLLGNT KGRTPKSKLR NALELLEMEK 240
KMIEEVPDLE FGDKTKRLRQ ACFKAKYKRR RLFSSSS
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| Functional Description ? help
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| Source |
Description |
| UniProt | Putative transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB026640 | 0.0 | AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Jiao Y, et al.
A genome-wide analysis of blue-light regulation of Arabidopsis transcription factor gene expression during seedling development.
Plant Physiol., 2003. 133(4): p. 1480-93
[PMID:14605227] - Schauser L,Wieloch W,Stougaard J
Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus japonicus.
J. Mol. Evol., 2005. 60(2): p. 229-37
[PMID:15785851] - Koszegi D, et al.
Members of the RKD transcription factor family induce an egg cell-like gene expression program.
Plant J., 2011. 67(2): p. 280-91
[PMID:21457369] - Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H
RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis.
New Phytol., 2017. 213(4): p. 1909-1924
[PMID:27870062]
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