PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G65330.1
Common NameAGL78
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 341aa    MW: 38889.4 Da    PI: 8.2269
Description AGAMOUS-like 78
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G65330.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.21.7e-26554251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 +++++s++++++++R+++i+KKAeELS+LC++ev+vi+++++g+l+++++
  AT5G65330.1  5 SSSSSSRNSTSLTNRLKTIFKKAEELSILCAIEVCVIYYGPDGELRTWPK 54
                 799*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-4155IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.975156IPR002100Transcription factor, MADS-box
PfamPF003194.7E-14852IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-151088IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000084anatomyplant sperm cell
PO:0020090anatomyembryo sac central cell
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MKQASSSSSS RNSTSLTNRL KTIFKKAEEL SILCAIEVCV IYYGPDGELR TWPKERETVK  60
DMALRYKEAR KRKKSRNLHE FLEKEKDKDK GKTNLKKNWY PNFDHYSPQQ LSQLIQSLER  120
TLSTLQERLR IVEAQKLQNT NLVHQSLTPS YLNQTQHLNP SKFSLFMYNH GDATLSQLPL  180
SAPHSNQLIN YQNHLMQHGF GQNMCSDNIT NNNFEHPGVS NTQDYSPLLS VQASAVNNYG  240
LNNHLMQQQD QLHGFDQNMC MVSEIINNNN GLQHPNLSNT VPHEFSSDFN QNPYGNAVGN  300
ISFSQDMFSS YDASSLLQTS SLPPLHNIPS SYCFPGNSRL L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16973RKRKK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184249380.0
Genevisible255514_s_at1e-119
Expression AtlasAT5G65330-
AtGenExpressAT5G65330-
ATTED-IIAT5G65330-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G65330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT1G31640, AT1G46408, AT1G47760, AT1G48150, AT1G60880, AT1G60920
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G65330
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114790.0AB011479.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNA5.
GenBankAY1412240.0AY141224.1 Arabidopsis thaliana MADS-box protein AGL78 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_201336.10.0AGAMOUS-like 78
SwissprotQ9FLL04e-75AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLQ9FKQ50.0Q9FKQ5_ARATH; AGAMOUS-like 78
STRINGAT5G65330.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Representative plantOGRP6766218
Publications ? help Back to Top
  1. De Bodt S, et al.
    Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
    J. Mol. Evol., 2003. 56(5): p. 573-86
    [PMID:12698294]
  2. Parenicová L, et al.
    Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
    Plant Cell, 2003. 15(7): p. 1538-51
    [PMID:12837945]
  3. Kofuji R, et al.
    Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
    Mol. Biol. Evol., 2003. 20(12): p. 1963-77
    [PMID:12949148]
  4. de Folter S, et al.
    Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
    Plant Cell, 2005. 17(5): p. 1424-33
    [PMID:15805477]
  5. Borges F, et al.
    Comparative transcriptomics of Arabidopsis sperm cells.
    Plant Physiol., 2008. 148(2): p. 1168-81
    [PMID:18667720]
  6. Day RC,Herridge RP,Ambrose BA,Macknight RC
    Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signaling, and gene expression regulation.
    Plant Physiol., 2008. 148(4): p. 1964-84
    [PMID:18923020]
  7. Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC
    An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis.
    Plant Physiol., 2010. 154(1): p. 287-300
    [PMID:20631316]
  8. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]