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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT5G62165.1 |
Common Name | AGL42, FYF, MTG10.20 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
MIKC_MADS |
Protein Properties |
Length: 210aa MW: 24673.4 Da PI: 9.957 |
Description |
AGAMOUS-like 42 |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 91.1 | 5.5e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien + rqvtfskRrng+lKKA+ELSvLCda+ ++iifs++g+lye+ss
AT5G62165.1 9 KKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSS 59
68***********************************************96 PP
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2 | K-box | 66.9 | 6.7e-23 | 77 | 170 | 4 | 97 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
++++ ++ + ++l+qe++ + +ie L+ +R+llG+++ s+sl+eLq++ +qL++sl k+R++K +l++eq+e+l+ kek+l een +L++k
AT5G62165.1 77 ETSNHDSQIHLQQLKQEASHMITKIELLEFHKRKLLGQGIASCSLEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQK 170
34444788899******************999************************************************************98 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 31.959 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.36E-33 | 3 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.66E-43 | 3 | 78 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.6E-22 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.146 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009838 | Biological Process | abscission |
GO:0009909 | Biological Process | regulation of flower development |
GO:0010150 | Biological Process | leaf senescence |
GO:0030154 | Biological Process | cell differentiation |
GO:0080187 | Biological Process | floral organ senescence |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 210 aa
Download sequence Send
to blast |
MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQLSLIIFSQ RGRLYEFSSS 60 DMQKTIERYR KYTKDHETSN HDSQIHLQQL KQEASHMITK IELLEFHKRK LLGQGIASCS 120 LEELQEIDSQ LQRSLGKVRE RKAQLFKEQL EKLKAKEKQL LEENVKLHQK NVINPWRGSS 180 TDQQQEKYKV IDLNLEVETD LFIGLPNRNC
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 6e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 6e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_R | 6e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_S | 6e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
5f28_A | 7e-22 | 1 | 82 | 1 | 83 | MEF2C |
5f28_B | 7e-22 | 1 | 82 | 1 | 83 | MEF2C |
5f28_C | 7e-22 | 1 | 82 | 1 | 83 | MEF2C |
5f28_D | 7e-22 | 1 | 82 | 1 | 83 | MEF2C |
6c9l_A | 6e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_B | 6e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_C | 6e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_D | 6e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_E | 6e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_F | 6e-22 | 1 | 82 | 1 | 83 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. |
Uniprot | TISSUE SPECIFICITY: Expressed in quiescent center (QC) cells of root tips (PubMed:18162590, PubMed:21689171). Expressed at the base of the petiole of cotyledons and leaves, in flower buds, petals, sepals and abscission zone of flowers and siliques. {ECO:0000269|PubMed:18162590, ECO:0000269|PubMed:21689171}. |
Functional Description ? help
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Source |
Description |
TAIR | Encodes a MADS box transcription factor. Expressed in quiescent center. |
UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
Function -- GeneRIF ? help
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- Role for AGL42 in the floral transition in the apical and axillary meristems.
[PMID: 21609362] - FYF controls floral senescence/abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA in Arabidopsis.
[PMID: 21689171]
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Phenotype -- Disruption Phenotype ? help
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Source |
Description |
UniProt | DISRUPTION PHENOTYPE: No visible phenotype under normal growth conditions. {ECO:0000269|PubMed:21609362}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY054220 | 0.0 | AY054220.1 Arabidopsis thaliana At2g45660/F17K2.19 mRNA, complete cds. |
GenBank | AY065206 | 0.0 | AY065206.1 Arabidopsis thaliana unknown protein (At5g62165) mRNA, complete cds. |
GenBank | AY066035 | 0.0 | AY066035.1 Arabidopsis thaliana At2g45660/F17K2.19 mRNA, complete cds. |
GenBank | AY096509 | 0.0 | AY096509.1 Arabidopsis thaliana unknown protein (At5g62165) mRNA, complete cds. |
GenBank | AY141213 | 0.0 | AY141213.1 Arabidopsis thaliana MADS-box protein AGL42 mRNA, complete cds. |
Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] - Parenicová L, et al.
Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell, 2003. 15(7): p. 1538-51 [PMID:12837945] - Kofuji R, et al.
Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses. Mol. Biol. Evol., 2003. 20(12): p. 1963-77 [PMID:12949148] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 2003. 302(5646): p. 842-6 [PMID:14593172] - Adai A, et al.
Computational prediction of miRNAs in Arabidopsis thaliana. Genome Res., 2005. 15(1): p. 78-91 [PMID:15632092] - de Folter S, et al.
Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. Plant Cell, 2005. 17(5): p. 1424-33 [PMID:15805477] - Pina C,Pinto F,Feij
Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation. Plant Physiol., 2005. 138(2): p. 744-56 [PMID:15908605] - Nawy T, et al.
Transcriptional profile of the Arabidopsis root quiescent center. Plant Cell, 2005. 17(7): p. 1908-25 [PMID:15937229] - Maher C,Stein L,Ware D
Evolution of Arabidopsis microRNA families through duplication events. Genome Res., 2006. 16(4): p. 510-9 [PMID:16520461] - Helliwell CA,Wood CC,Robertson M,James Peacock W,Dennis ES
The Arabidopsis FLC protein interacts directly in vivo with SOC1 and FT chromatin and is part of a high-molecular-weight protein complex. Plant J., 2006. 46(2): p. 183-92 [PMID:16623882] - Blakeslee JJ, et al.
Specificity of RCN1-mediated protein phosphatase 2A regulation in meristem organization and stress response in roots. Plant Physiol., 2008. 146(2): p. 539-53 [PMID:18162590] - Hacham Y, et al.
Brassinosteroid perception in the epidermis controls root meristem size. Development, 2011. 138(5): p. 839-48 [PMID:21270053] - Dorca-Fornell C, et al.
The Arabidopsis SOC1-like genes AGL42, AGL71 and AGL72 promote flowering in the shoot apical and axillary meristems. Plant J., 2011. 67(6): p. 1006-17 [PMID:21609362] - Chen MK, et al.
The MADS box gene, FOREVER YOUNG FLOWER, acts as a repressor controlling floral organ senescence and abscission in Arabidopsis. Plant J., 2011. 68(1): p. 168-85 [PMID:21689171] - Chen MK,Lee PF,Yang CH
Delay of flower senescence and abscission in Arabidopsis transformed with an FOREVER YOUNG FLOWER homolog from Oncidium orchid. Plant Signal Behav, 2011. 6(11): p. 1841-3 [PMID:22041990]
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